NACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTAGATTGCTCCAATCTATACACAAAAGATGGCACTTCTATCC
ACTACCCTACAGTGTGCACTTAACTTCATATACAATCTAAGTAACATATA
CTTATGGAGTATATGATAAGTGTCAGGCATGATCCCAGTTTAGGGGGACA
TATACTGGCTTCCTAGAGCAAACAGTTGGAGAGTTAAATGCTATTGCTTA
TTATCAGTGACACAAGGTGAGTAAGCAGAGCTTAGCAGCTGAGGGTACTG
TGAACATAGTAGGGTAAGATAATACTCCTCTGAAATAATTCTAGAACTGA
TACCTGGAGAAACCACCCATCTAATAGGCTAGGAAAACCATAATGCACTT
AGTGTTCCAGAATGGCAAGTGTCTAGAGGTGAACATTCTTCTCAGGTGAC
AGTTTGGCTAAGTTAGGGAGTGAAAAAGTAACAGACCTAAAATGCTAGGG
TCAAATCATTCAGTGCCTCAAGGTCTGTGGCCAGGAATCCAGAATTTACA
CTCAGCACTGAGACACAAGCAAATGGTTTTCATCAGACAATAACAAGGTC
AGGTTTACACAGTAGTTTGCCACACATTCTTCTAGACGTGTGTGTATGGG
GTGCTGTGACTGCAGTGCTTGGGAGTAAGAGGGCAGTCAGGGTGAGGAAA
TGATGCAGCCTGATTTGACCCATGCAGGG

NCGATGCTGTGGGTAGCCTGGNGGCCGCCTGGTTCCAACATATGGTGAAC
TATAGAAGGTGCCAAAACATCTCTTGTCTCCACTTCCCAGCTCACTGTGG
GAGCCCTGAGATTACAGTTACACACTGCTTCATCTGGCTTTATGTGTGTC
CTAGAGGCTAGAATTCATTTTCTCATGATTGTTCAGAAGGCACTTTATCC
ACTGTACTGGATACTTTTATGTCAATTTGACATAAGCTAAAGTCATCTTA
GAGGAGGGAATGTCAATTAAGAAAATGCCTCTATAACATTAGGCTATAGG
CAATTTCTTAACTAGTTANTGATGGAGGAGAGACCATCTCACTGTGGGTG
GTGTTATCCTTGGGCTGGTGGACTTGGGCTCTGCAAGAAAGCTGGCTGAG
CAAGCCATGGGGAGCAAGTCAGTAAGCAGCACTCCTCCATGACTTCTACA
TCAACTTCTGCTTCCAGGATCCTGCCCAGTTTGAGTTCTTGCCATGACAT
CCTTTGATGAAGAGGAGTGCTGTGAAAATGTAAGTCAAATACTTTCCTCC
TCAATTTGCTTTGGTTATGGTGTTTCATCGCAGCAGTAGAAAAACTTCGA
TATCCTCTGAGCCACTACCCCAACTCTTATTGTGTATCGAGATGACTTGG
TTGAGCCAAATTGATGCTCCTCTGGTATAGAGAACAGAAAAGTACTCTCT
CAGATGCTGATGATGTAGTT

Query= MSMg01no480_o18.b1 MSMg01no480_o18.b1 CHROMAT_FILE:
MSMg01no480_o18.b1 PHD_FILE: MSMg01no480_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
         (612 letters)



>mm_chr6_107675616_107676629
          Length = 1014

 Score = 1164 bits (602), Expect = 0.0
 Identities = 611/614 (99%), Gaps = 2/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaagatggcacttctatccactaccctacagtgtgcacttaacttcatatacaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaagatggcacttctatccactaccctacagtgtgcacttaacttcatatacaatcta 260

                                                                       
Query: 61  agtaacatatacttatggagtatatgataagtgtcaggcatgatcccagtttagggggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaacatatacttatggagtatatgataagtgtcaggcatgatcccagtttagggggac 320

                                                                       
Query: 121 atatactggcttcctagagcaaacagttggagagttaaatgctattgcttattatcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatactggcttcctagagcaaacagttggagagttaaatgctattgcttattatcagtg 380

                                                                       
Query: 181 acacaaggtgagtaagcagagcttagcagctgagggtactgtgaacatagtagggtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaaggtgagtaagcagagcttagcagctgagggtactgtgaacatagtagggtaaga 440

                                                                       
Query: 241 taatactcctctgaaataattctagaactgatacctggagaaaccacccatctaataggc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatactcctctgaaataattctagaactgatacctggagaaaccacccatctaataggc 500

                                                                       
Query: 301 taggaaaaccataatgcacttagtgttccagaatggcaagtgtctagaggtgaacattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggaaaaccataatgcacttagtgttccagaatggcaagtgtctagaggtgaacattct 560

                                                                       
Query: 361 tctcaggtg-acagtttggctaagttagggagtgaaaaagtaacagacctaaaatgctag 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaggtggacagtttggctaagttagggagtgaaaaagtaacagacctaaaatgctag 620

                                                                       
Query: 420 ggtcaaatcattcagtgcctcaaggtctgtggccaggaatccagaatttacactcagcac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcaaatcattcagtgcctcaaggtctgtggccaggaatccagaatttacactcagcac 680

                                                                       
Query: 480 tgagacacaagcaaatggttttcatcagacaa-taacaaggtcaggtttacacagtagtt 538
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tgagacacaagcaaatggttttcatcagacaagtaacaaggtcaggtttacacagtagtt 740

                                                                       
Query: 539 tgccacacattcttctagacgtgtgtgtatggggtgctgtgactgcagtgcttgggagta 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccacacattcttctagacgtgtgtgtatggggtgctgtgactgcagtgcttgggagta 800

                         
Query: 599 agagggcagtcagg 612
           ||||||||||||||
Sbjct: 801 agagggcagtcagg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1014
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1004
Effective search space:   604408
Effective search space used:   604408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)