BAC Information

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BAC

Clone NameMSMg01-480O24
Chromosome6 (Build37)
Map Location 18,271,017 - 18,271,464
singlet/doubletsinglet
Overlap geneCftr
Upstream geneCav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O24.T7 (MSMg01no480_o24.b1)MSMg01-480O24.TJ (MSMg01no480_o24.g1)
ACCAG561460AG561461
length728724
length of high quality
(start - end)		655 (51 - 705)638 (81 - 718)
definitionCHROMAT_FILE: MSMg01no480_o24.b1 PHD_FILE: MSMg01no480_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:24 2005CHROMAT_FILE: MSMg01no480_o24.g1 PHD_FILE: MSMg01no480_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATAATTTCTCCTTTAACTGCTATTACATAAATATATCAT
ATTTTCATTAGTCATTAATCAATTGACTGCATCTAGGCTGTTTCTATTTC
TTGGCTATTATGACTAGAGCAACAGCAAATATGGATGAGCAGGTTTCTCT
GTAGTAGGATAGAAAGTCATTTGGATATATGACCAAGAGTGGTCTAACAG
GATCATGTGGTAGATCTATTTATAACGTTTTGATGAACCACACAGATTTC
CATAATGGCTGAACCAGCTTGCTATCTCACCAGCATTCAGTGCGTGTTGT
CATTTCTCCATATTTAAACCACTATTTTTTTGGGGGGTGGGGGATTTTGA
TCATAGCCATTCTGTCTGAGGTAAGATAAAATCTCAAAGTAGTTTTATTA
TATATTTCTCCGGTGGCTAAGGATAGCTAATGTCTTCAAAAGTTTCTCAG
CCATTTGTTTAACCTTTTGTAGTAACTTGAGCTTGTTTTCACTTTTAAAT
TTAGTGTTTTGAAGTCATTGCTCTGTAGTTCAGGCTGAGATGGAATTCAC
TGTGTTTCTCAGGCTGTCTTGGAACTCACCATCTCTGCTTCTCTTTTGTG
TGTGCAGGGATTACAGCAGGGATTCCACATGCCACCATGTCCAGCTTCTA
TTTAGATCTTCCCTGATNGCAGATACCA

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCAAAACAGTCTCTTA
AAGAGCAAGTCGCAGGCTTCACCCTTCTTTCAAAGGCACAGGTAGTAGAG
TTCACCTCCTCTAAGTCCATGAGCAGACTCCATACATGATCGTTTTGCAA
TTATTTGCACTATTTTCTTCCCTCTTTCCTTCTTCTTTGCTTTTCTGTGT
GTATGTCCACTAATGTGCATGCATGTGTATATGTACTTGCATGTGGAAGC
AAGAGTATATCCACAGGTATTGTCCCTCTTGTGCCCAGCCTGGAACTCTC
TTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTC
TGTGTCCCCAGCACTGGGGTTAGAAGCATGGGAAATGCCTGGCTTTTTTC
ATTTTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTGCTTCCTCA
GCATCCCAGCACTAGAGACGGGTTTCTTGAACTTCTTCTTCTGTCTCCTC
TTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGC
CCTGGAAGAACCTCATTTTTTCTGAGGAGCTAATGGCCTGCTGGAAGATA
CTCTTCTCACTCAGAAGTGCCTGAAGGGAGTCGTACTGCCAGACATTGCT
CTCTTCTATGACCTAAGGGAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o24.g1 MSMg01no480_o24.g1 CHROMAT_FILE:
MSMg01no480_o24.g1 PHD_FILE: MSMg01no480_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:24 2005
         (638 letters)



>mm_chr6_18271017_18272054
          Length = 1038

 Score =  843 bits (436), Expect = 0.0
 Identities = 445/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttccaaaacagtctcttaaagagcaagtcgcaggcttcacccttctttcaaaggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcttccaaaacagtctcttaaagagcaagtcgcaggcttcacccttctttcaaaggcaca 389

                                                                       
Query: 61  ggtagtagagttcacctcctctaagtccatgagcagactccatacatgatcgttttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtagtagagttcacctcctctaagtccatgagcagactccatacatgatcgttttgcaa 329

                                                                       
Query: 121 ttatttgcactattttcttccctctttccttcttctttgcttttctgtgtgtatgtccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttatttgcactattttcttccctctttccttcttctttgcttttctgtgtgtatgtccac 269

                                                                       
Query: 181 taatgtgcatgcatgtgtatatgtacttgcatgtggaagcaagagtatatccacaggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taatgtgcatgcatgtgtatatgtacttgcatgtggaagcaagagtatatccacaggtat 209

                                                                       
Query: 241 tgtccctcttgtgcccagcctggaactctctttgtgggctaggatcacttgccacagagc 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgtccctcaggtgcccagcctggaactctctttgtgggctaggatcacttgccacagagc 149

                                                                       
Query: 301 cccagggatccacctgtctctgtgtccccagcactggggttagaagcatgggaaatgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cccagggatccacctgtctctgtgtccccagcactggggttagaagcatgggaaatgcct 89

                                                                       
Query: 361 ggcttttttcattttgcatgggttctgggaatggactcagtgcactgagttgcttcctca 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  ggcttttttcattctgcatgggttctgggaatggactcagtgcactgagttgcttcctca 29

                                       
Query: 421 gcatcccagcactagagacgggtttctt 448
           ||||||||||||||||||||||||||||
Sbjct: 28  gcatcccagcactagagacgggtttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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