BAC Information

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BAC

Clone NameMSMg01-481F23
Chromosome6 (Build37)
Map Location 15,174,855 - 15,175,162
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F23.T7 (MSMg01no481_f23.b1)MSMg01-481F23.TJ (MSMg01no481_f23.g1)
ACCAG561794AG561795
length798764
length of high quality
(start - end)		---314 (241 - 554)
definitionCHROMAT_FILE: MSMg01no481_f23.b1 PHD_FILE: MSMg01no481_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:59 2005CHROMAT_FILE: MSMg01no481_f23.g1 PHD_FILE: MSMg01no481_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTGTGAAATCCAGCAAGCCGCGCTCGCNTCTTTACANAAATCGACCNN
CCACTTTCCAATTGACTTTTTACCGTGTAAAACCCCCCCCCCTCTCCTCC
CCCCCAAAGGGGGAAAAAAACCCCCCCCCCCTTTTTCCCGGNNNNNTNGN
NNAATAAANNGGGGAAAAAATTAAAAAAGAGGAAGGGCCCGGGGGGGAAA
CAACCCGCTCTTTTTTTTTAAGGAAAGAACAACCCCCCCACCCCCGGGGG
GAAACAAAACAAAAAAGGGGGGCCCCCTTTTTTTTTTTCCCCCCCCACAA
AATGGTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAACCCCCCCCCCCCA
CAAAAAAAAAGAGTGTGTTTTTTATTGGCCCCCCCCCCCCCCCCCCCCCC
CCCCACAAAAAAAAAAACCCCCCCCCCCCCCCCCCCGCGGCTTCTCNNTT
NNNATATANNNNNNTTTNNNNNTGTTTTTTTTCTTCTTCTCCCCCCCCCC
CCCCCCCCCAAACAAACAAAAAAAAATTTTCCCCCNCTTTTTTTCAATNC
CCCCCCCCCCCCCCCCCCCCCCCCCNCCCCNCNCCCCCTCTTTTTTTTTT
TTTTTTTTTTTTTNTNNTAAAAAAAAAAAAAAAAAAAANAANNNNNCCCT
ATAATTTCCTTTTCCCTCCCTCCTCTCTCTTNNTTNNCNNCCCNTCCTTT
TTATNNTNNNNTNTNNNNNAATATATNANAAGAGGCCCACACACCATTTT
TTCTTTTTTTTTTTTTATAAAAATTTCCCATTTTGCCTATAAGACTCC

ATTGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACCACAAACTAGAATTAATATTTAACAAC
TATATCCCATGCTCCTGATATGAATTACCCTTCACTTTGATATCTTGAGC
GGGCTTATTGGGAACTGTAAAATGAATCCCGGAATTAGGGGTGGTCAAAC
ACCCTCATAGAATCCGGGGGAGGGGAGATGGTATTCGTATCTATTTTATT
TTTAATTAAGGGACCAGTATCCTCCTATTTGCCATTTACCTATTTGTAGC
TGGTTCTGTGACATCCACATGTACATTGCTGCAAATATACTACATTTTTA
TTCTATTTTCTGATAATTTCATCAAGCTGAATTTATCTTAACTACAAAAA
AATGGTATTTATTTTCTCTAAATGTCTTTATATTTTTTAAAAAATTCTAT
TGGTTTATTCCCATTGTATACTTTCATTTGCATCCTACTGATAACACTTT
ATTCTGATACATGATTACACTGTCAATTTTTTGTTTGTTTGTTTGTTTGT
TTGTTTGTTTTTGGGTTTTGTTTTCTTTTCTTTACTGGGTAGACCTTCCT
TACATTTTTGAAAAAAGGACCCTCATATTTAGCCATTTGTTACTTCTAAC
TTATATTACCTTTCCTGAGGGAGAACCTTAATTTTCCAGTTTGTTACACT
TTGCCCGAACTATTTAATTGAAAACAAGAAAGTCCATTCTCCTCTAAATT
TTTCAGAACTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f23.g1 MSMg01no481_f23.g1 CHROMAT_FILE:
MSMg01no481_f23.g1 PHD_FILE: MSMg01no481_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:59 2005
         (314 letters)



>mm_chr6_15174655_15175368
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattttatttttaattaagggaccagtatcctcctatttgccatttacctatttgtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattttatttttaattaagggaccagtatcctcctatttgccatttacctatttgtagc 260

                                                                       
Query: 61  tggttctgtgacatccacatgtacattgctgcaaatatactacatttttattctattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttctgtgacatccacatgtacattgctgcaaatatactacatttttattctattttc 320

                                                                       
Query: 121 tgataatttcatcaagctgaatttatcttaactacaaaaaaatggtatttattttctcta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tgataatttcatcaagctgaatttatcttaactacaaaaaa-tggtatttattttctcta 379

                                                                       
Query: 181 aatgtctttatattttttaaaaaa-ttctattggtttattcccattgtatactttcattt 239
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 380 aatgtctttatattttttaaaaaaattctattggtttattcccattgtatacttttattt 439

                                                                       
Query: 240 gcatcctactgataacactttattctgatacatgattacactgtcaattttttgtttgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcatcctactgataacactttattctgatacatgattacactgtcaattttttgtttgtt 499

                    
Query: 300 tgtttgttt 308
           |||||||||
Sbjct: 500 tgtttgttt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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