BAC Information

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BAC

Clone NameMSMg01-481M15
Chromosome6 (Build37)
Map Location 129,430,422 - 129,430,824
singlet/doubletsinglet
Overlap genenone
Upstream genePzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a
Downstream geneOlr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481M15.T7 (MSMg01no481_m15.b1)MSMg01-481M15.TJ (MSMg01no481_m15.g1)
ACCAG562112AG562113
length856810
length of high quality
(start - end)		72 (75 - 146)398 (70 - 467)
definitionCHROMAT_FILE: MSMg01no481_m15.b1 PHD_FILE: MSMg01no481_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:32 2005CHROMAT_FILE: MSMg01no481_m15.g1 PHD_FILE: MSMg01no481_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCACCCCGCGGGAT
TCTTCCTAAATCCTATCACCACTGTGGCTCAGGGAGCTTCAAGGTGAATA
GATGTGTGTGTGTGTGTGTCCCTGTGTGTGTGTGTGTGTGTGTGTGANAN
AAAAAAAATTTTTATTTGGCGTTTNTTNNTTNNTGTTTTTTTTGGTTTTT
TTTTTTTTGTTTTTTTTTGTTTTTTTTTTGTTCGCTGGTTCTCTTCTTTT
TTTCTCCCCTCCCCCCTTCCTCCCCTCCCCCTCCTCCTCCCCCCTCCCCC
CTCCCCCCCCCCCCTTTTCCCTCCCTTCCGCCCCCCCCCCCTCCCCCCCC
CCTCCTTCTCCTTCTCCTCCCCCCTCCCCTCTTCCCCCCTTCTCCCTCCC
CTTCCTCCCTCTCTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTT
CCCTCCCTCCCCTCCCTTCTCCCTCTCTCCTCCCTTCTCCTCTCCCCCCC
CCCCTTTCCCTCCCTCCCCCCCCCTCCCTTCCCCCCCCTCCCCTCCCCCC
TCCCCCCTCCCCATCTCCTCCCCTCCCTCCCCCCCCCCCCCCTTCTCTCC
CCTTCTCCCCTCCCCCCTCTTCCCCCCCCCCTTCTCCTCCCTCCTTCTCC
CCCTTCCCTCCTCCCCTTTCCCTTTCTCCTTCCTCTCCCCCTCCCCTCCC
TCCTCCCCTCTCCCTTCCACCCTCCTCTTTTTTCTCTTTCCTTATCCTCT
CCCTCCCCCCTCCCTTCTCCCCCCTTTCCCACCTCCTTTTCCCTCCTCCT
CCTCCTATCTTTTCCCTTCCTCCTCCCTCCCCTTCTCCCTCCTCCCTCTC
CCCCCG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAGTATCTTTGTCTTTCCAGATGGCTCAGC
TTACGGAATTCTCCAGCATCCTCTTACCGTAGCTCTTTTTCTTTAGATGG
CTTGGCCACATTCTAAACAGGCTAAGCTTGGACAAGCACAGAGCTTATTT
TCTTTCCTTTCTGTCTTTTTTATTTTATGTTTTTATTGTTTGCTCACAGC
TTGTTATCCACTGTTTGGAAAATGATTGCTTTGAGCATCATGACTACTTT
TAGTTTTGGGTGGAAAGCATGCACAATCCCCACTGCTCCATCCAGGCTTT
AGGCAACAGTCCAAAGTAAGTTTTTTTTTCTTTTGAAGCTGGGGCATTAG
CATTGAAGGACGATGTATCCGGCTGAAAACATAAATAAACTGCAAAAAAT
AAAAAATAAACTGGAGTCTAAGACTGAAGGGTGAATTTCTTAGCTGTCTG
CTGCAGTTGCTATTTGAAAGCTGATGGAGAGCTGTTTTTAGACCATGCTG
ATCTTCATCTCTCCTTGAGCTCTAGAAAGCTGGTGATCATTGCTGAACCT
CTGTCTGAGCAAATTCCTGACTGGCCCCCCCGGCGGACCTTGTATTCCAA
CCCGGAACAGGACCCACCCTGGGTAAGCCCGGCCCTGGGATATTTAACCG
GGCTAACAGAACAGCCCTTCCGGGTCATTGGCCGGGGGAAAATTTTTTAT
TTAAGGGGAAAAAACTGGGCGAGGAAGGGTGGGTTTAATTTCCCGGGGAG
GGGGGTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_m15.g1 MSMg01no481_m15.g1 CHROMAT_FILE:
MSMg01no481_m15.g1 PHD_FILE: MSMg01no481_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:33 2005
         (398 letters)



>mm_chr6_129430222_129431024
          Length = 803

 Score =  704 bits (364), Expect = 0.0
 Identities = 392/404 (97%), Gaps = 7/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtatctttgtctttccagatggctcagcttacggaattctccagcatcctcttaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttagtatctttgtctttccagatggctcagcttacggaattctccagcatcctcttaccg 544

                                                                       
Query: 61  tagc-tctttttctttagatggcttggccacattctaaacaggctaagcttggacaagca 119
           |||| || | |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tagcttc-tgttctctggatggcttggccacattctaaacaggctaagcttggacaagca 485

                                                                       
Query: 120 cagagcttattttctttcctttctgtcttttttattttatgtttttattgtttgctcaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagagcttattttctttcctttctgtcttttttattttatgtttttattgtttgctcaca 425

                                                                       
Query: 180 gcttgttatccactgtttggaaaatgattgctttgagcatcatgactacttttagttttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcttgttatccactgtttggaaaatgattgctttgagcatcatgactacttttagttttg 365

                                                                       
Query: 240 ggtggaaagcatgcacaatccccactgctccatccaggctttaggcaacagtccaaagta 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggtggaaagcatgcacagtccccactgctccatccaggctttaggcaacagtccaaagta 305

                                                                       
Query: 300 agttttttttt-----cttttgaagctggggcattagcattgaaggacgatgtatccggc 354
           |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agttttttttttttttcttttgaagctggggcattagcattgaaggacgatgtatccggc 245

                                                       
Query: 355 tgaaaacataaataaactgcaaaaaataaaaaataaactggagt 398
           |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 244 tgaaaacataaataaactgcaaaatataaaaaataaactggagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 803
Length adjustment: 9
Effective length of query: 389
Effective length of database: 794
Effective search space:   308866
Effective search space used:   308866
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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