Query= MSMg01no481_n05.b1 MSMg01no481_n05.b1 CHROMAT_FILE:
MSMg01no481_n05.b1 PHD_FILE: MSMg01no481_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:35 2005
(619 letters)
>mm_chr6_115811145_115812163
Length = 1019
Score = 1143 bits (591), Expect = 0.0
Identities = 609/619 (98%), Gaps = 8/619 (1%)
Strand = Plus / Plus
Query: 5 gaattcatagatgt----ttaccccactgaacagagggttgactttaattgtccttgcct 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagatgtagagt----ccactgaacagagggttgactttaattgtccttgcct 260
Query: 61 gttaggtttattgtgaagatgaaataaaattgtgtttgaagaactaagggctattatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaggtttattgtgaagatgaaataaaattgtgtttgaagaactaagggctattatagt 320
Query: 121 atgaaaagtgtgtgttttcagagtattgacaagtccatgtggtttattccagccatattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaagtgtgtgttttcagagtattgacaagtccatgtggtttattccagccatattt 380
Query: 181 tcacagtggacacgtactgccttgtcactattctctttaatagtgactcttctggctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacagtggacacgtactgccttgtcactattctctttaatagtgactcttctggctggg 440
Query: 241 acatccaagaatcccagtgatgttggtttgagagcccccactccaccaccttggacatag 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 acatccaagaatcccagtgatgttggtttgagagcccccacaccaccaccttggacatag 500
Query: 301 tctgagggttcagtctagtttcagtatttacattctttgctgtctccaccaccaccacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgagggttcagtctagtttcagtatttacattctttgctgtctccaccaccaccacca 560
Query: 361 ctactactactacttcttcttctccttttttaaaagattttatttattatatatgtaagt 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctactactacttcttcttcttctccttttttaaaagattttatttattatatatgtaagt 620
Query: 421 acactgtagttgtcttcagacactccagaagagggagtcagatctcattacggatggttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acactgtagttgtcttcagacactccagaagagggagtcagatctcattacggatggttg 680
Query: 481 tgagccaccatgtggttgctaggaattgaactcaggaccttcagaagagcagtcagtgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagccaccatgtggttgctaggaattgaactcaggaccttcagaagagcagtcagtgct 740
Query: 541 cttaacctctgagccatctgtctctccttcttgattccttttcctaagagctgtgcctgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttaacctctgagccatctgtctctccttcttgattccttttcctaagagctgtgcctgc 800
Query: 601 cactcttctgcacgcctgg 619
|||||||||||||||||||
Sbjct: 801 cactcttctgcacgcctgg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_n05.g1 MSMg01no481_n05.g1 CHROMAT_FILE:
MSMg01no481_n05.g1 PHD_FILE: MSMg01no481_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:35 2005
(578 letters)
>mm_chr6_115988047_115989020
Length = 974
Score = 1075 bits (556), Expect = 0.0
Identities = 572/580 (98%), Gaps = 6/580 (1%)
Strand = Plus / Minus
Query: 1 tgtgaaagctaatacaaccaaaactaatataacagtgtaggtagtgaaatctccttgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgtgaaagctaatacaaccaaaactaatataacagtgtaggtagtgaaatctccttgaga 522
Query: 61 ccctggagccctcttccccttcagagccattctcatcagtgccaccacttgcttccacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccctggagccctcttccccttcagagccattctcatcagtgccaccacttgcttccacgc 462
Query: 121 ttccactgtgttctgcccctgtgaactggagatagtttgcttaactctgccagtaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttccactgtgttctgcccctgtgaactggagatagtttgcttaactctgccagtaatcag 402
Query: 181 atattccggtgcctctgtctcacccacacacttgtgcctgacaggctgggcagccatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atattccggtgcctctgtctcacccacacacttgtgcctgacaggctgggcagccatgat 342
Query: 241 agcaaagcctacatctgggttctgcttcaccctttgaaaggaattagttgtgagtcttta 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcaaagcctacatctgggctctgcttcaccctttgaaaggaattagttgtgagtcttta 282
Query: 301 taagctttgcaccagacctcttttttttttttttacatatttttcatgtgcattggtatt 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 281 taagctttgcaccagacctc----ttttttttttacatatttttcatgtgcattggtatt 226
Query: 361 ttgcttgcatatctggg--ttttttttggggggggtcagctcttctggaactggacttac 418
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttgcttgcatatctgggttttttttttggggggggtcagctcttctggaactggacttac 166
Query: 419 agacaattgtgatgtgccatatgggtgctgggaattgaactctggtcctttggaagagta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 agacaattgtgatgtgccatatgggtgctgggaattgaactctggtcctttggaagagta 106
Query: 479 gtcaacgttcttaaccactgagccatctctccaacccctatataggactttaaattatga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtcaacgttcttaaccactgagccatctctccaacccctatataggactttaaattatga 46
Query: 539 gtgagatccgcgaggagaaaggaatgaggtttaataaagt 578
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 45 gtgagatccgtgaggagaaaggaatgaggtttaataaagt 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 974
Length adjustment: 10
Effective length of query: 568
Effective length of database: 964
Effective search space: 547552
Effective search space used: 547552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
