BAC Information

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BAC

Clone NameMSMg01-481P17
Chromosome6 (Build37)
Map Location 46,776,722 - 46,777,183
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481P17.T7 (MSMg01no481_p17.b1)MSMg01-481P17.TJ (MSMg01no481_p17.g1)
ACCAG562260AG562261
length1,915754
length of high quality
(start - end)
---641 (71 - 711)
definitionCHROMAT_FILE: MSMg01no481_p17.b1 PHD_FILE: MSMg01no481_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:47 2005CHROMAT_FILE: MSMg01no481_p17.g1 PHD_FILE: MSMg01no481_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGGAGTGGTGGTGTGGTGAGGGCGGGTGCGGGTGGGAGCGCGCGAG
AGCGAGGGGTTCTCTCGACGCGTGTTANAGCCCTTGACATNAGCGGCNCG
GAACCGCGAGATGTTGTGCCTCTGGAATAGTATGTGTCGACGAGTTCTAC
CTCACCACATNTCTAACATATACTCTCCGCGATGATTATGGGTGTGTATC
NTCTTTCCTCCTTATTAACTCTATTGTTTGTGCTGCTCCTGTTCTCNCTC
TCCCACTATCTCAGTGACTGTACGGTGAGTGTGTCGTAAACGNACATGTG
ACTAAAACATATCACTCTATCTATTGATAACAAAGAAGGATCAGCGTATA
TCTATAACGCACAGCACAGAGTATATCAATAGAGANATACAACGANCATG
CNAATCCNNTGGCTGTACATGACGTANTATACGCAACTGTATCGTACTGA
GTTAGATGCTCGCAGACGAGTAGGTCAACGTAGACCTACTGAGGTACCCC
AATATAGCAGCGTCCCATGTGCTACCATAATCTACTCTTGGCTCGCAGAC
TAATGTTNCATGTACATTCGTGATCGTATAGGTTATGAACTGCAGATATA
TCTATATCTATATGCTGAATACTAGTCTGAGCGGCATGTCTGATTTCGTT
GCGTACTCGATGACACAAATACGAACACAATCATAATTTCTGCTCGAAAC
ATTACGAATTAGAGATACTCTCTATCTCAAGATATCGCCGGCGAACCATA
TCCGTCTACTGCGGATGCGAGTCTTTGCGTTGCATGATGCGTACCAGTAC
TCCTGCTGCATTCTACGCTGTACGGAGTGATCGAGGACTCGAAGTGTGTT
GATGAGCCGTGATGCGCACACACGCATTCACTAGTGGCGTACANANGACT
GCGTCTATCGAGTACTACGCACCACATTCTCGCATGCAATGCACGATCGG
CGTACACGCACAATGCGACTATCGGATGATCGCTGCAGTACGGTGCACGG
CGTACGGACGACAGGACTATATATCATTGCGATCGCTGTAACGCATGTAG
TACTGCNAATGCCGAGACGTGATGGACTACCGTAGTGTCTCAGACATATA
TCACTACGACACGCGCGCTGTGTACGTGCTCCTACGCGTATCATGATCTG
AACTCGTGATACTCTATCCGTATATTGTGACGCGTGCNATGTGTGCTGAG
ACGNCGCGCGTNGGACGAGTGCAGTCACCTCACTGCTCCATTATCACGTC
GTACAGTGTCGTCGNTACTGTACTGTCGCGTCCNTNTGACGTCTCTATCG
AAGCAGAGTCGCGACTCGGTAGTACACTGTCGGTTCGCTCTGCACACGTG
GGACTGCGTCGTNTGCGGTCTGCTATGATGACGCTGCGATGTCGTAGCGT
ACANTATGATGTGAGTGGGACTACGCGCGTTGTGCATGGGNTGCATGACG
GCCGGTGCAGACGTATACGACGTGANCAGCGTACTACNTGTCGTTGCTCT
GATCCNGCATCATCGATCATCGTCGACGTGTCGTCGACTNCGTATGCGCG
CGATGCTGCGCGCGCTGNTCACAGNCAGCATAGCGCATNGACGACGTGTG
TACTGCTACGACATCTCATATCGCCCCCGGAGACGACGTGACGATCGCAG
CTCNCGTACACTAATNACAGTATCATACGACTACGCCGCGCATACGTGTG
ACGCTCTGACCTGATGCCTNAANTCAGATTACTACGGCTAACTAATCGCA
ACNCGNCGAGTCATACGAAACNTCTCGTATCAACGTCTCATGGGATCAAT
GTCCGGCATTGTGTGGAGCGTCGTAGGGACGACGCGATAGCGTATCGCCG
TGCATGACACTCTACGCAACGTCAGCGNTCGCATGCTGCTGTCCTAGCGA
CGACCANTGGCGAGN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGACTATAAGTATTTTTAAAAGCACAAA
GAACTGAATAAAATATCTCAAAAATGAATAAAATAAAAAATAAATTAAAA
AGATAGAAATACAGAAGAAAATCAAACCTGAAATTGTGAAAAATTAAAAA
CAATGTAGTAAGTCAAATAAAATTTAGTGGACGGTATCATCAACAGAGTG
GATTAAAGACATGGCAAGACACCTGAGCTTAAAGACAAGGTATGGAATAA
TTGGTCAAGGCAAAGATAATATAGTAAGAATGCACCAACATGAATTTAAA
GGTATGCTGGACACTCTGAAAAGACTAAATCTAAAGATAATGGATACAGG
AGGAAAAAAATCATTCTAAACATGCAGAAAAAAATTGTAGCAGAAAATCT
CTTAGAGTTAAGAAAGCAGATGCTAATCCAGATACAGGGGGCTTTGAGGA
CAATCAAGCAGATAAAGCCAGGAAAGAATACACACACACACACACACACA
CACACACACACACACACACACACACACACACAAACACACACACACACACA
CAAACACACACACACACACACACACACACACACACACACACATATATATA
TGTACACACATAAAGGCAGGGGAATCATGGTAATAACAGACTTGTCAACT
GAAACTAAGATCCAGGAGGGACTGAAAAGATGTATTTCAAGTTTGAAAAG
ATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_p17.g1 MSMg01no481_p17.g1 CHROMAT_FILE:
MSMg01no481_p17.g1 PHD_FILE: MSMg01no481_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
         (641 letters)



>mm_chr6_46776368_46777410
          Length = 1043

 Score =  785 bits (406), Expect = 0.0
 Identities = 448/462 (96%), Gaps = 2/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgactataagtatttttaaaagcacaaagaactgaataaaatatctcaaaaatgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatgactataagtatttttaaaagcacaaagaactgaataaaatatctcaaaaatgaata 757

                                                                       
Query: 61  aaataaaaaataaattaaaaagatagaaatacagaagaaaatcaaacctgaaattgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaataaaaaataaattaaaaagatagaaatacagaagaaaatcaaacctgaaattgtgaa 697

                                                                       
Query: 121 aaattaaaaacaatgtagtaagtcaaataaaatttagtggacggtatcatcaacagagtg 180
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 696 aaattaaaaacaatgtagtaagtcaaataaaattcagtggacggtattatcaacaaagtg 637

                                                                       
Query: 181 gattaaagacatggcaagacacctgagcttaaagacaaggtatggaataattggtcaagg 240
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 636 gattaaagagatggcaagacacctgagcttaaagacaaggtatggaataattagtcaagg 577

                                                                       
Query: 241 c-aaagataatatagtaagaatgcaccaacatgaatttaaaggtatgctggacactctga 299
           | |||||||| ||||||| |||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 576 ccaaagataacatagtaaaaatgtaccaacatgaatttaaaggtacgctggacactgtga 517

                                                                       
Query: 300 aaagactaaatctaaagataatggatacaggaggaaaaaaa-tcattctaaacatgcaga 358
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 516 aaagactaaatctaaagataatggatacaggaggaaaaaaaatcattctaaacatgcaga 457

                                                                       
Query: 359 aaaaaattgtagcagaaaatctcttagagttaagaaagcagatgctaatccagatacagg 418
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaaaaattgcagcagaaaatctcttagagttaagaaagcagatgctaatccagatacagg 397

                                                     
Query: 419 gggctttgaggacaatcaagcagataaagccaggaaagaata 460
           ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 396 gggctttgaggaccatcaagcagataaagccaggaaagaata 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space:   651823
Effective search space used:   651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)