BAC Information

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BAC

Clone NameMSMg01-482G22
Chromosome6 (Build37)
Map Location 128,849,044 - 128,849,637
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i
Downstream geneClec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482G22.T7 (MSMg01no482_g22.b1)MSMg01-482G22.TJ (MSMg01no482_g22.g1)
ACCAG562599AG562600
length700757
length of high quality
(start - end)		625 (57 - 681)548 (75 - 622)
definitionCHROMAT_FILE: MSMg01no482_g22.b1 PHD_FILE: MSMg01no482_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:20 2005CHROMAT_FILE: MSMg01no482_g22.g1 PHD_FILE: MSMg01no482_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGG
ATTCCTCTATATTCTCTCATAAAACTTGGAGTTGTTGCAAGGGAAAAGAA
TGAAAATTTTTTCAGTTATGGGTATATTTGGCTTAAGTAAAAAAAAAAAA
ATCTACATTCCTCACAAACTTCCTCTTTTACAATGTATGAACACTGTTTC
CCAGGATACCCAATATAATTTTGCTAAAATAAACAAGCAAGTAAATAGGA
ATTAAAGTAAGGGAAGAGGAAAGAAATGAAAAAATTAAAACAAAACACTG
AAACAGACATTTTTCAAACCACAGAAGACAGATTTCCTTCAGAAGATTGA
AACAGAACTCCCACAGGATTCTTCATTTCCATAATTTACCATAAACCTAC
ATTTGACCTTCACCAAAAGGCCAAGAATCGATTTACCATAAACCTAAAAT
ATCAGAGAATTTGTTGTTGCTTCTGGGTACCCAGCCTCATGTAGCTGCCT
GCAGCCACAGGAACCAGGTTCCTGAGGGCAGACTGGAGCTGTATGAGAGA
GAAGAAATGAGAGGAAGACAAATTTCTGATCAAGGCCCAATGTTTACTAA
GAGTCTATGCTTATAAAGGGGGGAGGCCCATCCCCTGCCAAGCCAGGCTT
CTTGATGCTTTCTTGCTAAGTAGTTAGCACTTAGTCTGCCAGAGTTTTAG


CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAACCCCCTATCCGATTTGGGATAGGTAAAGATCCTCCA
GTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGTAGATGCTGACGAGG
ATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTG
TACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACACA
GTACTACCGGAAGATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGA
TGCCCCAACCGATACGAACGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATAGCCAGAAGTTGGAAAGAACCCAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGATACATTTACACAATGGAATACTACTCAGC
TATTAAAAAAAGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAG
GGCATCATCCTGAGTGAGGTAACCCCATCACAAAGGAACTCACACAATAT
GTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAGGAA
TAAGATACAACTTGCTAAACGCATGATAGTCAAGAAGAAGGAAGACCAAA
GTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_g22.b1 MSMg01no482_g22.b1 CHROMAT_FILE:
MSMg01no482_g22.b1 PHD_FILE: MSMg01no482_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:20 2005
         (625 letters)



>mm_chr6_128849023_128850030
          Length = 1008

 Score =  857 bits (443), Expect = 0.0
 Identities = 566/623 (90%), Gaps = 32/623 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   ttctctcataaaacttggagttgttgcaagggaaaagaatgaaaattttttcagttatgg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttctctcataaaacttggagttgttgcaagggaaaagaatgaaaattttttcagttatgg 556

                                                                       
Query: 66  gtatatttggcttaagtaaaaa---aaaaaaaatctacattcctcacaaacttcctcttt 122
           || ||||||||||      |||   |||||||||||| ||||||||||||||||||||||
Sbjct: 555 gtttatttggctt------aaatttaaaaaaaatctatattcctcacaaacttcctcttt 502

                                                                       
Query: 123 tacaatgtatgaacactgtttcccaggatacccaatataattttgctaaaataaacaagc 182
           | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcgatgtatgaacaccgtttcccaggatacccaatataattttgctaaaataaacaagc 442

                                                                       
Query: 183 aagtaaataggaattaaagtaagggaagaggaaagaaatgaaaaaattaaaacaaaacac 242
           ||||||| |||||||||||||||     ||||||||||||||||||  ||||    ||||
Sbjct: 441 aagtaaacaggaattaaagtaag-----aggaaagaaatgaaaaaa--aaaa----acac 393

                                                                       
Query: 243 tgaaacagacatttttcaaaccacagaagacagatttccttcagaagattgaaacagaac 302
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 392 tgaaacagacatttttcaaaccacagaagacagatctccttcagaagattgaa-cagaac 334

                                                                       
Query: 303 tcccacaggattcttcatttccataatttaccataaacctacatttgaccttcaccaaaa 362
           |||||||||||||||| |||||||||||||| ||||||||||| |||| |||| ||||||
Sbjct: 333 tcccacaggattcttcgtttccataatttactataaacctacacttgatcttcgccaaaa 274

                                                                       
Query: 363 ggccaagaatcgatttaccataaacctaaaatatcagagaatttgttgttgcttctgggt 422
           ||||||||||||||||||||  |||||||||| ||||||||||||||| | |||||||||
Sbjct: 273 ggccaagaatcgatttacca--aacctaaaatgtcagagaatttgttggtacttctgggt 216

                                                                       
Query: 423 acccagcctcatgtagctgcctgcagccacaggaaccaggttcctgagggcagactggag 482
            |||||||||         |||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tcccagcctc---------cctgcagccacaggaaccaggttcctgagggcagactggag 165

                                                                       
Query: 483 ctgtatgagagagaagaaatgagaggaagacaaatttctgatcaaggcccaatgtttact 542
           |||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||||
Sbjct: 164 ctgtatgagagagaagaaacaagaccaagacaaatttctgatcaaggcccaatgtttact 105

                                                                       
Query: 543 aagagtctatgcttataaaggggggaggcccatcccctgccaagccaggcttcttgatgc 602
           |||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 104 aagagtctgtgcttataaaggggggaggcctatcccctgacatgccaggcttcttgatgc 45

                                  
Query: 603 tttcttgctaagtagttagcact 625
           |||| ||||||||||||||||||
Sbjct: 44  tttcctgctaagtagttagcact 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1008
Length adjustment: 10
Effective length of query: 615
Effective length of database: 998
Effective search space:   613770
Effective search space used:   613770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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