BAC Information

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BAC

Clone NameMSMg01-482J23
Chromosome6 (Build37)
Map Location 61,560,129 - 61,708,982
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482J23.T7 (MSMg01no482_j23.b1)MSMg01-482J23.TJ (MSMg01no482_j23.g1)
ACCAG562744AG562745
length715747
length of high quality
(start - end)		642 (72 - 713)597 (75 - 671)
definitionCHROMAT_FILE: MSMg01no482_j23.b1 PHD_FILE: MSMg01no482_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:34 2005CHROMAT_FILE: MSMg01no482_j23.g1 PHD_FILE: MSMg01no482_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,560,129 - 61,560,770)(61,708,386 - 61,708,982)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAATTCTTT
AAAATTTCGCTACCATCCTCAATATACAGAAAACAAAAGATATTTTGGAT
CATTTATCATCCTATCCAGTATAAATGACGAAGATCTGAGATTAAGCCTT
GACTTGCATTTTTTATTAGCATTGCTGTGTTTGCCTTCCAGTGGCATGTA
CAAAGAAGTTCAGAATTGGAAAACACATCCCACATTTGCTAACCTAGATT
TTCTTATCTTTATATCATTTGGCAACTAATGGAGAATTAAAAGTTTTGTG
CTGTGTGTTTTTAATTTTACATTCAAGGACATTGCAGTTTGAATTAAAAC
CTTAATAGCACGGACTTGATAAGTTCATCAATTATAAATGAAACGTATAT
CATGAATGATGGATTCCGTGATGAGAATGTAAGAAGTTTTAAAATGCAAG
TACAGTGCATTATAGGGAATGATTAACATAACTGATTGACCTGCTAGGTA
ATAACATCTCAATTTTCCATGGGTTTTCAGCTAATAAGGTGTCATGTGAG
AGCTCTGAAGCTTAGAGTTACAATAGACTCCAAAAGTGTCCTTATGAATT
AGTTATTTTTAGTGTGAGAACACCTTCCCTGTAATATCCTGTGAAGACAT
TTTGGTAGACGGTTACAGGCATGAATCACCTTTCTAGCCACACACTATCA
CACAGAGGTACTTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCTGTGATTGTACCTTCTAGCTA
TGACAAGGAAGCTACAACTATGCAGTCTCAAAAACATTGATGCATAAGCA
AGACCTGAACAATCCTATCAGTTGACATTCCAATGCAGAGAGAGGGAATC
TCACTGGTCCTCCCTATGCCAGATAAATATCTGCAAGCAATTAACTACTA
AGAGAGGAAGAGTCAGTCTTCCCAAAGGATGTGGCCCATTATTGGTTTTC
CAACATTCAGTGGTCAACTTTAGAAGCATGTAGGCAACACCGAAAGAACG
CTCCTGTTATGTTTATATGACTATTTGTATATAAAGAACAATTGTTAAAA
GAGTGGAAGCCATTAATCTGAGGGGTAAGGGGGTCCAGACTTGAAAAAGA
CAGGAGACATGGAAGAGAGAAATGTGTTATATATTTTGATTTATTAAATT
GATTATTATTTTGTCACCAACACCCTCCTCAACCTTCTAGCCATAACACT
ATTGTGTTCAATGGACAATATCCAAACCAAGAAAAGAAATAACAGCAACA
GAAGGAAAAGAATAGAGGAAGGATGAGCATTAAGTCACAAAATCCTTGTC
TTTTCTCATGACTATCTACAAACCATCCAACTTTGATCTTGTCTTCGCCA
GCTCCTCATCTGTATGCTTACCCTATCTCACAGATTTTGTGAGGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_j23.b1 MSMg01no482_j23.b1 CHROMAT_FILE:
MSMg01no482_j23.b1 PHD_FILE: MSMg01no482_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:34 2005
         (642 letters)



>mm_chr6_61559929_61560970
          Length = 1042

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacagaaaacaaaagatattttggatcatttatcatcctatccagtataaatgacga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atatacagaaaacaaaagatattttggatcatttatcatcctacccagtataaatgacga 260

                                                                       
Query: 61  agatctgagattaagccttgacttgcattttttattagcattgctgtgtttgccttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatctgagattaagccttgacttgcattttttattagcattgctgtgtttgccttccag 320

                                                                       
Query: 121 tggcatgtacaaagaagttcagaattggaaaacacatcccacatttgctaacctagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcatgtacaaagaagttcagaattggaaaacacatcccacatttgctaacctagattt 380

                                                                       
Query: 181 tcttatctttatatcatttggcaactaatggagaattaaaagttttgtgctgtgtgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttatctttatatcatttggcaactaatggagaattaaaagttttgtgctgtgtgtttt 440

                                                                       
Query: 241 taattttacattcaaggacattgcagtttgaattaaaaccttaatagcacggacttgata 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattttacattcaaggacactgcagtttgaattaaaaccttaatagcacggacttgata 500

                                                                       
Query: 301 agttcatcaattataaatgaaacgtatatcatgaatgatggattccgtgatgagaatgta 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttcatcaattataaatgaaacatatatcatgaatgatggattccgtgatgagaatgta 560

                                                                       
Query: 361 agaagttttaaaatgcaagtacagtgcattatagggaatgattaacataactgattgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagttttaaaatgcaagtacagtgcattatagggaatgattaacataactgattgacc 620

                                                                       
Query: 421 tgctaggtaataacatctcaattttccatgggttttcagctaataaggtgtcatgtgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctaggtaataacatctcaattttccatgggttttcagctaataaggtgtcatgtgaga 680

                                                                       
Query: 481 gctctgaagcttagagttacaatagactccaaaagtgtccttatgaattagttattttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctctgaagcttagagttacaatagactccaaaagtgtccttatgaattagttattttta 740

                                                                       
Query: 541 gtgtgagaacaccttccctgtaatatcctgtgaagacattttggtagacggttacaggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgagaacaccttccctgtaatatcctgtgaagacattttggtagacggttacaggca 800

                                                     
Query: 601 tgaatcacctttctagccacacactatcacacagaggtactt 642
           || |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggatcacctttctagccacacactatcacacagaggtactt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_j23.g1 MSMg01no482_j23.g1 CHROMAT_FILE:
MSMg01no482_j23.g1 PHD_FILE: MSMg01no482_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:34 2005
         (597 letters)



>mm_chr6_61708123_61709119
          Length = 997

 Score = 1123 bits (581), Expect = 0.0
 Identities = 593/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctctgtgattgtaccttctagctatgacaaggaagctacaactatgcagtctcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgctctgtgattgtaccttctagctatgacaaggaagctacaactatgcagtctcaaaaa 801

                                                                       
Query: 61  cattgatgcataagcaagacctgaacaatcctatcagttgacattccaatgcagagagag 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cattgatgcataaacaagacctgaacaatcctatcagttgacattccaatgcagagagag 741

                                                                       
Query: 121 ggaatctcactggtcctccctatgccagataaatatctgcaagcaattaactactaagag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaatctcactggtcctccctatgctagataaatatctgcaagcaattaactactaagag 681

                                                                       
Query: 181 aggaagagtcagtcttcccaaaggatgtggcccattattggttttccaacattcagtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggaagagtcagtcttcccaaaggatgtggcccattattggttttccaacattcagtggt 621

                                                                       
Query: 241 caactttagaagcatgtaggcaacaccgaaagaacgctcctgttatgtttatatgactat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caactttagaagcatgtaggcaacaccgaaagaacgctcctgttatgtttatatgactat 561

                                                                       
Query: 301 ttgtatataaagaacaattgttaaaagagtggaagccattaatctgaggggtaagggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtatataaagaacaattgttaaaagagtggaagccattaatctgaggggtaagggggt 501

                                                                       
Query: 361 ccagacttgaaaaagacaggagacatggaagagagaaatgtgttatatattttgatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagacttgaaaaagacaggagacatggaagagagaaatgtgttatatattttgatttat 441

                                                                       
Query: 421 taaattgattattattttgtcaccaacaccctcctcaaccttctagccataacactattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaattgattattattttgtcaccaacaccctcctcaaccttctagccataacactattg 381

                                                                       
Query: 481 tgttcaatggacaatatccaaaccaagaaaagaaataacagcaacagaaggaaaagaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 tgttcaatggacaatatccaaaccaagaaaagaaataacagcaacagaaggaaaaaaata 321

                                                                    
Query: 541 gaggaaggatgagcattaagtcacaaaatccttgtcttttctcatgactatctacaa 597
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 gaggaaggatgagcattaagtcacaaaatccttgtctcttctcatgactatctacaa 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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