BAC Information

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BAC

Clone NameMSMg01-482P20
Chromosome6 (Build37)
Map Location 68,421,375 - 68,421,962
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIl23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102
Downstream geneIgkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482P20.T7 (MSMg01no482_p20.b1)MSMg01-482P20.TJ (MSMg01no482_p20.g1)
ACCAG563024AG563025
length762780
length of high quality
(start - end)
588 (78 - 665)346 (75 - 420)
definitionCHROMAT_FILE: MSMg01no482_p20.b1 PHD_FILE: MSMg01no482_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:01 2005CHROMAT_FILE: MSMg01no482_p20.g1 PHD_FILE: MSMg01no482_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTCATGCTCCGCAATGCACAGTAGTTGTTACTTCAATACTCAC
ACATTTGAAATCATGTACCAAACCATTGCATTCCAATTCCAAGCATAGTA
TATTTGTGAATCTTTCAAACATGAAAAAATAATGTAAAAGCTCTCCTCAT
ACAAACCCATATTGCCGGTGTGATTATACAGAGTTCATTTTGCTTCAGAC
TCCATGACCACAAAACAAATGAGAGAGAGAAGACTTTGTGGCTTTAAGAT
AGAAGAGTTATTGAAAATGCCATGTCTTCTGTCATATACAATCCACACCA
AGAGCAGAGCAAACAAGTCCCTGGAAATATAAAAAGAAAGATCTGTGAGT
GATCAAGAGAATACGTTCACATTGAGGATAGACTAATCCCCAGAGTATGC
TTTCTTCACTATAAGCCACAAGAAGGCACATCCTTATTTCTGCATAAGTA
GGAATGGTTGACCACACAAGTCCCTTCATAGAGAATGTGACTGTGGGCAA
ACAGAACACTGATCTGCACATCTGGAAGCCTCTGCTTGAAGTCCTCAATA
GAGCTTATAGAATTTGTTCTTTCTCTGACATGAACGTGAAAATTCTTGAT
TTTTTTTCTTCTGCTATCTTAGTGACTGAGCAAGTTTACAAGGAGCAAGA
AAATATCTAATAATAAATAAATAAATAAACTATTTTTTAAAGTAGCAAGT
CTGGCTAGGGAG
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAAATTCTTATACAAATGGATGTA
TCTGGAGGAAATTATTCTGAGTGAGGTAACCCAAACACAAAAGAACACAT
ATGATAAGTACTCAGTGATAAGTGGATATTAACCCAGCAGTTCAGACTTC
CCAAGATACAGTTTGAAAAACAAATGAAACGCAAGAAGGAAAACCAGAGT
GTGGACACTTTCCTTTTAGAAAGGGGAACAAAATACCCATGTAAGGAGGT
ACAGAGACAAAGTTCAGAGCAGAGAATGAATGCATGACCATCCAGAACCT
GTCCCACCTGGGAATTCATCCCATAAAAAAAAACCACCAAACACAGACAC
TATTCCAGATGTTAACAAGACCCCGCACACAGGAGATTGATATAGCTGTC
TCCTGAGAGGCTCTGCCAGTGCCTGAGTAATACAAAAGTGGATGCTCACA
GTCACCCATTAAATGGAGCACAGGGTCCTCAATGAAGGTGCTAGAGAAAG
TACCCAAGGAGCTGAAGGGGTTTGCAGCCCCCTAGGAGGAACACCAATGT
GAACTAACTAGTAACCCCAGAGCTCCCTGAGACTAAACCACCAATCAAAG
AACACACAGAGAGACTCATGGCTCTAGCTGCATAGGTAGCTGAGGATGGC
CTAGTGGGTCAGCAATAGGAAGAGAGGCCCTTGGTTCTCTGAAGGCTCTA
TGCTCCAGTATAGGGGGATGCCTGGTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_p20.b1 MSMg01no482_p20.b1 CHROMAT_FILE:
MSMg01no482_p20.b1 PHD_FILE: MSMg01no482_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:01 2005
         (588 letters)



>mm_chr6_68421175_68422162
          Length = 988

 Score = 1060 bits (548), Expect = 0.0
 Identities = 578/588 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagttgttacttcaatactcacacatttgaaatcatgtaccaaaccattgcattccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 788 gtagttgttacttcaatactcacacatttgaaatcatgtaccaaaacattgcattccaat 729

                                                                       
Query: 61  tccaagcatagtatatttgtgaatctttcaaacatgaaaaaataatgtaaaagctctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tccaagcatagtatatttgtgaatctttcaaacatgaaaaaataatgtaaaagctctcct 669

                                                                       
Query: 121 catacaaacccatattgccggtgtgattatacagagttcattttgcttcagactccatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 catacaaacccatattgccggtgtgattatacagagttcattttgcttcagactccatga 609

                                                                       
Query: 181 ccacaaaacaaatgagagagagaagactttgtggctttaagatagaagagttattgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccacaaaacaaatgagagagagaagactttgtggctttaagatagaagagttattgaaaa 549

                                                                       
Query: 241 tgccatgtcttctgtcatatacaatccacaccaagagcagagcaaacaagtccctggaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgccaagtcttctgtcatatacaatccacaccaagagcagagcaaacaagtccctggaaa 489

                                                                       
Query: 301 tataaaaagaaagatctgtgagtgatcaagagaatacgttcacattgaggatagactaat 360
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 488 tataaaaagaaagatctgtgagtgatcaagagaatacattcacattgaggctagactaat 429

                                                                       
Query: 361 ccccagagtatgctttcttcactataagccacaagaaggcacatccttatttctgcataa 420
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 428 ccccagagtatgctttcttcactataagccacaggaaggcacatacttatttctgcataa 369

                                                                       
Query: 421 gtaggaatggttgaccacacaagtcccttcatagagaatgtgactgtgggcaaacagaac 480
           || |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 gtgggaaaggttgaccacacaagtcccttcatagagaatgtggctgtgggcaaacagaac 309

                                                                       
Query: 481 actgatctgcacatctggaagcctctgcttgaagtcctcaatagagcttatagaatttgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 actgatctgcacatctggaagcctctgcttgaagtcctcaatagagcttatagaatgtgt 249

                                                           
Query: 541 tctttctctgacatgaacgtgaaaattcttgattttttttcttctgct 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctttctctgacatgaacgtgaaaattcttgattttttttcttctgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)