BAC Information

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BAC

Clone NameMSMg01-483H02
Chromosome6 (Build37)
Map Location 23,818,950 - 23,819,351
singlet/doubletsinglet
Overlap genenone
Upstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483H02.T7 (MSMg01no483_h02.b1)MSMg01-483H02.TJ (MSMg01no483_h02.g1)
ACCAG563370AG563371
length746751
length of high quality
(start - end)
442 (271 - 712)401 (325 - 725)
definitionCHROMAT_FILE: MSMg01no483_h02.b1 PHD_FILE: MSMg01no483_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:39 2005CHROMAT_FILE: MSMg01no483_h02.g1 PHD_FILE: MSMg01no483_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCTACCCATCAGTACCTTGTTAGTCATTTTCATCTCA
GAGTTCTTCATTTGGGATTCTCACGGCTATTCTCACAGGGATCCGATCCG
CATTACAATGTTGATCTTGGCCTTGTGCCCTACAACTAGATGACAACATG
AATGAAGCCTTGTGGAATTCCTAACCACAAAGTATTCTCTGTGTGTGTGT
GTGTGCAGGGAGAAGAGGGGATGTGAGAGATCAGGTCCTTGTGCTTTGAC
TTGCATTCCCCTGGTGATTAATGATCTTGAGCGTTTTGATGTACCTGTTC
ATGTGACTCCATTTTATAAGATTTGACTATGGACTTGTTGGAGTTTTTAA
TTAGAATTTTGTTGACCGCGCGTTACTGAACTGGATATATGGATATATGC
TTTGCATATTTTTGGGCATTAATGTCTTATCAGATGTAGGGTGCAAATAC
TGTTCTCCCAATCTGTAAGTGTCTTTCATTTTCTTGATTGTTCCCTTCAC
TGTACAGAAGATTTTTAGCTTTAAACAGTTTTAGCAGCATTTATTTTTAA
GACAAGTAGTCTCAATATTTTCTCCTGGGAATTTTACAGATTCAGGTCTT
ACATTTCTTACATTTAAATTTTAATCCACTTGAGTTTGTGTTTGAATATG
GTCTAAAACAAAAATCCAATTTGATCCTTTTGGCTGTGGGTATTCC
AAAANTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTAATACTGTAAAT
ACTATACTGCACCATGGCTAACTTGCATTATTGCTGGAGCCATAATGAAT
TTACACATACTAACTAGCTTAAAGCACACATTTATCTTGCTAATGACATA
GGTCTGAGTGTCATTAAACCAAAACCCAGATACCATATGCTGGCATTCCT
TTCGAGAAGCTTTAGCCAGATGCTTCGTCTGCAACCCTTATCCCCTTTTT
AAGAACCTTACTATGTCACAGAATGCTTTTCACGCATCACTCAGAATCAC
TGTTCTGATTTCCCCTTCCACACTGTCCTACACTTCCTATTGCAAAGAAC
TCACCTAAATAAGCTGTGGAAATCTCCCCATTTTAAAATTATTTCCCCAC
CGTCTTTAGTTCTCTCTGCTCCCTTATCTTTCTTTGTCATATAAGACACC
GAATATGCACCCCACACCCTACCCCCAATATCCCCCCCCCACACACACAG
CAAGCATTATCAGTGTAGATAATTGAGGCCATTATTTAGCACACCACACT
GTTAATTAACTTTCTGCATCTATTCTGTTTCTGTATATCTTTAAAATTCT
CTCTCTCATCCTTCATGCACCACTGTGCTCACTTCTTTATGTGCTGCTTT
GCTCATCCGCCCGTGGTTTCCTTTTTTCTTACTTCTGGAGTTCACTCTGC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_h02.g1 MSMg01no483_h02.g1 CHROMAT_FILE:
MSMg01no483_h02.g1 PHD_FILE: MSMg01no483_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:39 2005
         (401 letters)



>mm_chr6_23818750_23819551
          Length = 802

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%), Gaps = 1/402 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttttcacgcatcactcagaatcactgttctgatttccccttccacactgtcctacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttttcacgcatcactcagaatcactgttctgatttccccttccacactgtcctacact 260

                                                                       
Query: 61  tcctattgcaaagaactcacctaaataagctgtggaaatctccccattttaaaattattt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttattgcaaagaactcacctaaataagctgtggaaatctccccattttaaaattattt 320

                                                                       
Query: 121 ccccaccgtctttagttctctctgctcccttatctttctttgtcatataagacaccgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccaccgtctttagttctctctgctcccttatctttctttgtcatataagacaccgaat 380

                                                                       
Query: 181 atgcaccccacaccctacccccaatatcccccccc-cacacacacagcaagcattatcag 239
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 381 atgcaccccacaccctacccccaatatccccccccacacacacacagcaagcgttatcag 440

                                                                       
Query: 240 tgtagataattgaggccattatttagcacaccacactgttaattaactttctgcatctat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagataattgaggccattatttagcacaccacactgttaattaactttctgcatctat 500

                                                                       
Query: 300 tctgtttctgtatatctttaaaattctctctctcatccttcatgcaccactgtgctcact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtttctgtatatctttaaaattctctctctcatccttcatgcaccactgtgctcact 560

                                                     
Query: 360 tctttatgtgctgctttgctcatccgcccgtggtttcctttt 401
           |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tctttatgtgctgctttgctcatctgcccgtggtttcctttt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)