Query= MSMg01no483_h24.b1 MSMg01no483_h24.b1 CHROMAT_FILE:
MSMg01no483_h24.b1 PHD_FILE: MSMg01no483_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:43 2005
(277 letters)
>mm_chr6_117966214_117966890
Length = 677
Score = 528 bits (273), Expect = e-154
Identities = 276/277 (99%)
Strand = Plus / Minus
Query: 1 tcatatatatgagtaggcaggtgtgtctaaccctgatgtgagggatccactcttggccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcatatatatgagtaggcaggtgtgtctaaccctgatgtgagggatccactcttggccat 418
Query: 61 gccaagaaggtcctgtcctgaaaggggacctgagataaacagcaggccaactaaagacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gccaagaaggtcctgtcctgaaaggggacctgagataaacagcaggccaactaaagacac 358
Query: 121 ccctttcccctaaactccctcatctttcatgactaacctggcatgccatttccctcaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccctttcccctaaactccctcatctttcatgactaacctggcatgccatttccctcaggg 298
Query: 181 acaccagtcacactgtcctagacactgaggaagggggtacaatgtgtgctccagggacaa 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 297 acaccagtcacactgtcctagacactgaggaagagggtacaatgtgtgctccagggacaa 238
Query: 241 agctacaccagtcagtcagttccttggtcatgttggt 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 agctacaccagtcagtcagttccttggtcatgttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no483_h24.g1 MSMg01no483_h24.g1 CHROMAT_FILE:
MSMg01no483_h24.g1 PHD_FILE: MSMg01no483_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:44 2005
(481 letters)
>mm_chr6_117843848_117844728
Length = 881
Score = 824 bits (426), Expect = 0.0
Identities = 473/498 (94%), Gaps = 17/498 (3%)
Strand = Plus / Plus
Query: 1 agccatggaaacagggcttctgccaaatatacccaggaccaaggaaagccaatgtcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agccatggaaacagggcttctgccaaatatacccaggaccaaggaaagccaatgtcccag 253
Query: 61 tagaaatggtgagttgacacttcatattttgtttttcattgcttcgtccctctgagctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tagaaatggtgagttgacacttcatattttgtttttcattgcttcgtccctctgagctgc 313
Query: 121 atccaagaaggcatttccactttcccatgggtttcaggcattggtctacattgtggctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atccaagaaggcatttccactttcccatgggtttcaggcattggtctacattgtggctgt 373
Query: 181 gcccgtgtctatggtgcatacactcaggact-------tcagtcactgaggacttcctat 233
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 374 gcccgtgtctatggtgcatacactcaggactcaggacttcagtcactgaggacttcctat 433
Query: 234 gttccctacacatagtaaacccaaaaagcacgaaagttggcatacaacacagattcctgc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gttccctacacatagtaaacccaaaaagcacgaaagttggcatacaacacagattcctgc 493
Query: 294 acatctatgttattgtgagttaattctcagtagccgaatcatcttagatgcccatctgtt 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 acatctatgttattgtgagttaattctcagtagccgaatcatcttagatgcccatcagtt 553
Query: 354 ggggactagataaggaagcattaacatttacaccccccc-------ccattattttattc 406
|||||||||||||||||||| ||||| |||||| | | | |||||||||||||
Sbjct: 554 ggggactagataaggaagcagtaacagttacacacacacacacacaccattattttatta 613
Query: 407 ---ataaagaaggactgggcctggggagatggctaggtcagtgaagtgcctgccaagcac 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaaataaagaaggactgggcctggggagatggctaggtcagtgaagtgcctgccaagcac 673
Query: 464 gcaggaggacacagaagt 481
|||||||||||||||||
Sbjct: 674 tcaggaggacacagaagt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
