BAC Information

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BAC

Clone NameMSMg01-483O13
Chromosome6 (Build37)
Map Location 90,637,675 - 90,638,051
singlet/doubletsinglet
Overlap geneIqsec1
Upstream geneV1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3
Downstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483O13.T7 (MSMg01no483_o13.b1)MSMg01-483O13.TJ (MSMg01no483_o13.g1)
ACCAG563724AG563725
length771772
length of high quality
(start - end)
377 (324 - 700)639 (78 - 716)
definitionCHROMAT_FILE: MSMg01no483_o13.b1 PHD_FILE: MSMg01no483_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:17 2005CHROMAT_FILE: MSMg01no483_o13.g1 PHD_FILE: MSMg01no483_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTTACCAGAAGATGGGACAGNCCATATAGTGTCATGCTTCC
AGAGACATAAAGAGGCTGAACCAATGGCCAAATAAATAGGGCCCACTAGC
CAGCCAGCCTAGCTAAATCACTGACTTCCAGGGTTAGAGACTCCAGCCCA
GAGAGTAAGATGAAGAATGCAAGAGGACACATGACATCAACCCCTGGTCC
TTACCCCATGTGGCACACAGGAATGAAGGACCATATAAGTAGCAAGCAAG
ACTTTCAACAGCCAGCCTTTATGAAGTCCTAGGTCAAAGTCATCTAGCAC
AGGCCAAAAGTGATGACAGGCAGGTCAAGTAATAGCAATGCATATGTTTG
TCCTTGTACCCCCCATGTACCAAGCTTGCATGCTTACAGTCTGGAAGGTG
GCGACATCAGTACCAGCCTTGTTTCACAGATGTGAAAAACACAAAATAGG
CCCACAGACAAAAAGACCTGGATAGACTTGGGGAGACAGTTCAGTCATCA
AAGAGCTTGCTACATAATTACAGGGACCTGAGTTTGATGCTCAGCATCCA
TGCAAAAAGCCGACCATCCCAGTCTTGGGGAGGCAGAAACAGGAGGACTA
ACCCTAACCCTAACCCTACGGCTTACTAGCCAGCCAACCTAGCTGAATCA
CTGACTTCAAGGGTTAGTTAGAGACCCTATCTCAAACATAAGGTGAAGAA
TGATAGAAGACAAGTAGGACT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATATCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAAGAAGAATGAAGACCGAAGTGTGGACACTAT
GCCCCTCCTTAGATTTGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_o13.b1 MSMg01no483_o13.b1 CHROMAT_FILE:
MSMg01no483_o13.b1 PHD_FILE: MSMg01no483_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:17 2005
         (377 letters)



>mm_chr6_90637475_90638251
          Length = 777

 Score =  659 bits (341), Expect = 0.0
 Identities = 368/377 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtcctaggtcaaagtcatctagcacaggccaaaagtgatgacaggcaggtcaagtaat 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aagtcctaggtcaaagtcatctagcacaggccaaaagtgacgacaggcaggtcaagtaat 260

                                                                       
Query: 61  agcaatgcatatgtttgtccttgtaccccccatgtaccaagcttgcatgcttacagtctg 120
           |||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||
Sbjct: 261 agcaatgcatatgtttgtccttgtactcttcacgtaccaagcttgcatgcttacagtctg 320

                                                                       
Query: 121 gaaggtggcgacatcagtaccagccttgtttcacagatgtgaaaaacacaaaataggccc 180
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggaggcgacatcagtaccagccctgtttcacagatgtgaaaaacacaaaataggccc 380

                                                                       
Query: 181 acagacaaaaagacctggatagacttggggagacagttcagtcatcaaagagcttgctac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagacaaaaagacctggataggcttggggagacagttcagtcatcaaagagcttgctac 440

                                                                       
Query: 241 ataattacagggacctgagtttgatgctcagcatccatgcaaaaagccgaccatcccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataattacagggacctgagtttgatgctcagcatccatgcaaaaagccgaccatcccagt 500

                                                                       
Query: 301 cttggggaggcagaaacaggaggactaaccctaaccctaaccctacggcttactagccag 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggggaggcagaaacaagaggactaaccctaaccctaaccctacggcttactagccag 560

                            
Query: 361 ccaacctagctgaatca 377
           |||||||||||||||||
Sbjct: 561 ccaacctagctgaatca 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)