BAC Information

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BAC

Clone NameMSMg01-484E12
Chromosome6 (Build37)
Map Location 119,397,855 - 119,398,182
singlet/doubletsinglet
Overlap geneWnt5b
Upstream geneZfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2
Downstream geneFbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E12.T7 (MSMg01no484_e12.b1)MSMg01-484E12.TJ (MSMg01no484_e12.g1)
ACCAG564007AG564008
length758725
length of high quality
(start - end)
328 (323 - 650)564 (82 - 645)
definitionCHROMAT_FILE: MSMg01no484_e12.b1 PHD_FILE: MSMg01no484_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:47 2005CHROMAT_FILE: MSMg01no484_e12.g1 PHD_FILE: MSMg01no484_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCTTXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAAGGAGGCGCGG
AATTCCTCTTTTCCAAAAAAGACCAAATTTGCTTTCAGGTGTCCGCCTTG
CCACTCACCCACACATTTCATCCTTTGAGCTTTTCTGCACTGTACCCCAT
TTCCCCTGGGCTCCCCAAGTCTGTGGCATTTCCATGCTGACTCTCCTTTG
CTCCCCTCTCTCTAGGGAGCTCCGCTTTGGAAGATGTTGGTCCCAGGGTT
TTGGGATGGGTTGAGGCCGGCCATGCCCAGCCTGCTGCTGGTGGTCGTGG
CAGCTCTGCTCTTTACTTGTTTCAGCTGCTGACTGACGCCAACTCCTGGT
GGTGAGTGAGAGGGCTGAGGTCTAGCCTGGACCCAACTCCTGGTGGTGAG
TGGGAGGGCTGAGGTCTAGCCTGGACCCAACTCCTGGTGGTGAGTGAGAG
GGCTGAGGTCTAGCCTGGACCCAACTCCTGGTGGTGAGTGGGAGGGCTGA
GGTCTAGCCTGGACCCAACTCCTGGTGGTGAGTGAGAGGGCTGAGGTCTA
GCCTGGACCCAACTCCTGGTGGTGAATGAGAGGGCTGAGGTCTAGCCTGG
ACCATAATCAAGCTCTGAAGCAGGGCCTCATGGGAGTGATCACACCTTTA
TCTGGGGAATACCGTGGGACCTCTTCCATTCCAGGAATGGTTCATTTTCT
CCCTCAAGCTCCTGGAGGTGAGGGTTTCATGAAAAGAAGAAAGCTTTGTC
CATGTGGG
TCCCCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGGTATCTGTTGTGTC
TCACCTCTCATCTCTAATTTTACTAATGTGGGGCATTCTCTTTCTCTTTC
TTTTTTTTTGGGGGGGGGATAATTTGGCTGAGGGCTTATCAGTCTTGTTT
CTCTTTTCAATGAACCAACTCTTGATTTCATCCACACCTTGGTTTGTTTT
TGTTCTTTCTGAAACAGAGTTTCATTACTTTCCACCCTGATCTTAATTCT
TTCCCCCCATCTATTGCCTTGGAGTTTGGTTTGTTCTTGGTTTTCCAAGT
CCTTCAAGTACATCATTAAGTTATTTGAGTCCTCTATTTTTTATGCAGTT
ACTCAGCGTAAACTTTGCCTTTAAGACGGTCTTCCTTGTGTCCCATGGCC
TTTGGTATGTGTGCTTTCCTTCTTACCCCATCCTAGAATTTTTTACTTAT
TTGATTTCTTCAGTAATCTCTTCATCATTCAATAGTGTTTTGTTTCATAC
CCATGAGTTTCTGTACTTTCTACACGTTCTAATGTTATTGATATTTATTT
TATTGTGGTCACATACCCTATAAGATGTTATTTCAGTTTTCCTGTATTTG
TTGATACTTGCTTTGTTCTAATATGTAATCTGTCCTTGAGACTGCTTCGT
GGACTGGCGAGAATGTGTATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e12.b1 MSMg01no484_e12.b1 CHROMAT_FILE:
MSMg01no484_e12.b1 PHD_FILE: MSMg01no484_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:47 2005
         (328 letters)



>mm_chr6_119397655_119398382
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctgctgactgacgccaactcctggtggtgagtgagagggctgaggtctagcctggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagctgctgactgacgccaactcctggtggtgagtgagagggctgaggtctagcctggac 469

                                                                       
Query: 61  ccaactcctggtggtgagtgggagggctgaggtctagcctggacccaactcctggtggtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 468 ccaactcctggtggtgagtgggagggctgaggtctagcctggacccaaatcctggtggtg 409

                                                                       
Query: 121 agtgagagggctgaggtctagcctggacccaactcctggtggtgagtgggagggctgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtgagagggctgaggtctagcctggacccaactcctggtggtgagtgggagggctgagg 349

                                                                       
Query: 181 tctagcctggacccaactcctggtggtgagtgagagggctgaggtctagcctggacccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tctagcctggacccaactcctggtggtgagtgagagggctgaggtctagcctggacccaa 289

                                                                       
Query: 241 ctcctggtggtgaatgagagggctgaggtctagcctggaccataatcaagctctgaagca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctcctggcggtgaatgagagggctgaggtctagcctggaccataatcaagctctgaagca 229

                                       
Query: 301 gggcctcatgggagtgatcacaccttta 328
           ||||||||||||||||||||||||||||
Sbjct: 228 gggcctcatgggagtgatcacaccttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 7
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)