BAC Information

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BAC

Clone NameMSMg01-484I09
Chromosome6 (Build37)
Map Location 110,387,745 - 110,388,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484I09.T7 (MSMg01no484_i09.b1)MSMg01-484I09.TJ (MSMg01no484_i09.g1)
ACCAG564189AG564190
length747741
length of high quality
(start - end)
377 (327 - 703)407 (75 - 481)
definitionCHROMAT_FILE: MSMg01no484_i09.b1 PHD_FILE: MSMg01no484_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:07 2005CHROMAT_FILE: MSMg01no484_i09.g1 PHD_FILE: MSMg01no484_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGAGCC
GCGGAATTCCACATTTTCTAAACAGTGACTTATCTGTTCCCTGGGACAAA
GGATAACTCCAGAAACTCATTATTTTTGTTGCTATTCTTATTCTGCCTGT
CCCTTTGTTCTTTGCAGGGCTTCTTTGACTGTTGCCAGGTTGAAAAGAAT
TCGGGCAGACAGGTAGCCAATCAAGAACTGGAAACCATGTACCCTGTGGA
TGCTCTTAGGCCCTGAAGTAGCAGTGTGCTGGGAGCCTAAGTATGTCTTT
CTTTCTTCTCTGAATAGTGGTACTTTAACATTTAGCAATGTATTGACATA
TAACAAAATCATCATGCTCTCACTAATTTGGAAAATTCTGGGAGAAAAAT
ATCTCAGTTAACTATTGTTTTCTTGGTTACCTGCTGGAAGAAATTGAGTT
ATGCACAGTTTTGATTACTAAAAATCATTGTAAAGATTGGGGTATAGCTC
AGTAGTATATATATATATATATATATATATATATATATATATATATATAT
ATATATATTCAGCATATTCAATTACCTAGTTTCATAACCATTGTCTTTAT
AAATCATAGGACAGTATTTAGCTGAAAATCCTAAGCATGTGTGTATTTTA
ACTCAATACTTAATAATAATAGTTATTATAGTAGTGACACCAAGTGCCTT
TGCTCAGATTTTATGATTCACATTGTATAATATTTTCTCACGTCATA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTTTACCTCTGTACCTCATTTTTA
ATAGAGTTATTTGGTTGTCTGGAGTCCAACTTCTTGACTTCTTTATATAT
ATATATATATATATATATATATATATATATATATATATATATATATTGGA
TATTAGTGCTATATCAGATTTAAGATTGGTAAGGATCTTTTCCCAATCTG
TTGGTTGCCTTTTTGACTTATTGACAGTGTCGTTTGCCTTACAGAAGCTT
TGCAATTTTATGAGGTCCCATTTGTCAACTATTGATCTTACAACACAAGC
CATTGTTGCTCTGTTCAGTATTTTTCCCCTGTGCCCATATCTTCAAGGAT
CTCCCCCACTTACTCCTCTATATGTTTCAGTGTCTGGGGTTTTATGTGGG
GTTCCTTGATCCACTTAGATTTGAGCTTTGCAAAAGGAGATCAGAATGGA
TTATAATGAATAATATCAAAAATTTCACGCGACTTCATATGCTGGCGAGG
ATGTGTATAAAGAGGAACACTCCTTCATTGCTGGTGGGATTACAAGCTGG
TTTAAACACTCTGGAAATCAGTTTGGCAGTTCCTCAGAGAATTGGACCTT
AGTATTACTAAGAGGATCCAGCCAATTTCTCCTCTTGTCTCTATACCCCA
GTATAATGTTCCAACCTTTGTAATAAGGAACACTTGGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_i09.b1 MSMg01no484_i09.b1 CHROMAT_FILE:
MSMg01no484_i09.b1 PHD_FILE: MSMg01no484_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:07 2005
         (377 letters)



>mm_chr6_110387545_110388321
          Length = 777

 Score =  520 bits (269), Expect = e-152
 Identities = 327/377 (86%), Gaps = 48/377 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttagcaatgtattgacatataacaaaatcatcatgctctcactaatttggaaaat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttagctatgtattgacatataacaaaatcatcatgctctcactaatttggaaaat 260

                                                                       
Query: 61  tctgggagaaaaatatctcagttaactattgttttcttggttacctgctggaagaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgggagaaaaatatctcagttaactattgttttcttggttacctgctggaagaaattg 320

                                                                       
Query: 121 agttatgcacagttttgattactaaaaatcattgtaaagattggggtatagctcagtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttatgcacagttttgattactaaaaatcattgtaaagattggggtatagctcagtagt 380

                                                                       
Query: 181 atatatatatatatatatatatatatatatatatatatatatatatatatattcagcata 240
           ||||||||||                                          ||||||||
Sbjct: 381 atatatatat------------------------------------------tcagcata 398

                                                                       
Query: 241 ttcaattacctagtttcataaccattgtctttataaatcataggacagtatttagctgaa 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 399 ttcaattacctagtttcataaccattgtctttataaatcataagacagtatttagctgaa 458

                                                                       
Query: 301 aatcctaagcatgtgtgtattttaactcaatacttaataataatagttattatagtagtg 360
           |||||||||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 459 aatcctaagcatgtgtgtattttaactcaatacttaata------gttattatagtagtg 512

                            
Query: 361 acaccaagtgcctttgc 377
           |||||||||||||||||
Sbjct: 513 acaccaagtgcctttgc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)