Query= MSMg01no484_j21.b1 MSMg01no484_j21.b1 CHROMAT_FILE:
MSMg01no484_j21.b1 PHD_FILE: MSMg01no484_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:15 2005
(675 letters)
>mm_chr6_13348188_13349262
Length = 1075
Score = 1245 bits (644), Expect = 0.0
Identities = 664/674 (98%), Gaps = 6/674 (0%)
Strand = Plus / Plus
Query: 1 ctgatgcttctctttaagagtaggtattttttaaatgatgtttttatttttcctttgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgcttctctttaagagtaggtattttttaaatgatgtttttatttttcctttgaca 260
Query: 61 acatattcatttagttttatattatgtctggttttattttgatactctgtgtccctaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatattcatttagttttatattatgtctggttttattttgatactctgtgtccctaaaa 320
Query: 121 atttttttctataaaagcttaggctcaatggcaggaactttgtacaaaattcttttgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttttttctataaaagcttaggctcaatggcaggaactttgtacaaaattcttttgttg 380
Query: 181 tttcatagatgttattggtatatctggagacacttttgaaaagtttattttagttttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcatagatgttattggtatatctggagacacttttgaaaagtttattttagttttatt 440
Query: 241 gatgtgttttttgaggtaattgaggctgtgagccactgatgtggatgctggaaatccaat 300
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtgtatgtggaggtaattgaggctgtgagccactgatgtggatgctggaaatccaat 500
Query: 301 tctggtcctttgcaagagcaatacatactcttagccatggagccatctcttcacctggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ------cctttgcaagagcaatacatactcttagccatggagccatctcttcacctggat 554
Query: 361 gactatgcttttaacaaacatctctggttctttcttctattatccccatcctctgccatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gactatgcttttaacaaacatctctggttctttcttctattatccccatcctctgccatc 614
Query: 421 tcaattgccagaagtttgcgttttattaagttcttcagagaactcattttatcttaatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcaattgccagaagtttgcgttttattaagttcttcagagaactcattttatcttaatta 674
Query: 481 gtctggatggagaagattaggtttgtttttgtttttttaaaaattctttctccatttctt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 675 gtctggatggagaagattaggtttgtttttgtttttttaaaaattctttctctatttctt 734
Query: 541 cttttgtttgtccttttatcactgagttgagagattattttgtataatttttttaatctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cttttgtttgtccttttatcactgagttgagagattattttgtataatttttttaatctc 794
Query: 601 actttctaactaatgtactttcctctgtatatttctagagtgttgttttggccatatgcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 actttctaactaatgtactttcctctgtatatttctagagtgttgttttggccatatgcc 854
Query: 661 acagtcaggaagtg 674
||||||||||||||
Sbjct: 855 acagtcaggaagtg 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_j21.g1 MSMg01no484_j21.g1 CHROMAT_FILE:
MSMg01no484_j21.g1 PHD_FILE: MSMg01no484_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:15 2005
(586 letters)
>mm_chr6_13559558_13560543
Length = 986
Score = 1118 bits (578), Expect = 0.0
Identities = 584/586 (99%)
Strand = Plus / Minus
Query: 1 tgaatcccaaggacaattaaagtcagagggcaggcaggttggtagctactaggaggaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgaatcccaaggacaattaaagtcagagggcaggcaggttggtagctactaggaggaaag 727
Query: 61 ctatggagaagacaaacagagaaagctgtgctacttaaaagttcagagggcatattcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctatggagaagacaaacagagaaagctgtgctacttaaaagttcagagggcatattcagg 667
Query: 121 aatggaggtcagctaagtggaagaaaggccggattgtttcagagaaacagcaaaaaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatggaggtcagctaagtggaagaaaggccggattgtttcagagaaacagcaaaaaaccc 607
Query: 181 caactgtgagagaaaacatgcttaggctcttggccgtatatgaaagtaaaagaagaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caactgtgagagaaaacatgcttaggctcttggccgtatatgaaagtaaaagaagaaaga 547
Query: 241 gaaaaactcctaagtcagaaaagctgctaagtcacatggcagggctctgtaagcagtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaaaactcctaagtcagaaaagctgctaagtcacatggcagggctctgtaagcagtgag 487
Query: 301 acttctgggaaggaaagctcactaagaggataattattcctcccattcctttcctgaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acttctgggaaggaaagctcactaagaggataattattcctcccattcctttcctgaggg 427
Query: 361 acagccctttgaccagataataggcaggcctagctccactgactctgaagggaggagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acagccctttgaccagataataggcaggcctagctccactgactctgaagggaggagaca 367
Query: 421 atggcatgaaatgttataacctttggagcagatcggaatgtcagttctccaaccagggtc 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atggcatgaaatgttacaacctttggagcagatcggaatgtcagttctccaaccagggtc 307
Query: 481 agaagtagattccattctttagaccaggaggaaaaatatttcccttaatgagtctcaaca 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 306 agaagtagattccattctttagaccaggaggaaaaatctttcccttaatgagtctcaaca 247
Query: 541 gagctctggtgtcctcaagcgtctccaaggcgactgtaactttaag 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagctctggtgtcctcaagcgtctccaaggcgactgtaactttaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
