Query= MSMg01no484_k01.b1 MSMg01no484_k01.b1 CHROMAT_FILE:
MSMg01no484_k01.b1 PHD_FILE: MSMg01no484_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:15 2005
(607 letters)
>mm_chr6_128574017_128575022
Length = 1006
Score = 919 bits (475), Expect = 0.0
Identities = 555/607 (91%), Gaps = 41/607 (6%)
Strand = Plus / Minus
Query: 1 tatcatgacccaagatgggaaattctgttttatttagatttagttgcgaaaatctttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tatcatgacccaagatgggaaattctgttttatttagatttagttgcgaaaatctttagt 911
Query: 61 ctaggaaaagtatgaatggtcagcaacataggtgaaagggtgcttgcctcaaattcatga 120
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 910 ctaggaaaagtatgaaaggtcagcaacataggtgaaggggtgcttgcctcaaattcatga 851
Query: 121 ggctcgaaggtcaactctcagcactgcaaaataaataaataaataaataaataaataaat 180
||||||||||||||||| ||||||| |||
Sbjct: 850 ggctcgaaggtcaactcccagcactacaa------------------------------- 822
Query: 181 aaataaataaataaataaatagatggagcatggtgcagaaccctgtgctcaacctggtgt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 --------aaa-aaataaatagatggagcatggtgcagaaccctgtgctcaacctggtgt 771
Query: 241 tgagtttatatggctgatgtcagagatggctgaggaggctccactgggtcttaactgagc 300
|||| | | |||||||| |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 770 tgag-taaaatggctgacgtcagagatggctgaggaggctccactgagtcttaagtgagc 712
Query: 301 tgtgaggccctcagatatacatccccttgcttccttcttcactggtcttggcggatgcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtgaggccctcagatatacatccccttgcttccttcttcactggtcttggcggatgcgt 652
Query: 361 ctgagcactatgcgatgagtgtgcaccatctgtctcctggaactcacagccagctgacag 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctgagcactctgcgatgagtgtgcaccatctgtctcctggaactcacagccagctgacag 592
Query: 421 ctgcaaagctctgtaattgtgagcacttggtataatttcactctgaccacagaaggagac 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgcaaagctctgtaattgtgaggacttggtataatttcactctgaccacagaaggagac 532
Query: 481 tttaaggaagtccttgcttttcttcttcacttgtaatgtgtgaatgtgtgacttggcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttaaggaagtccttgcttttcttcttcacttgtaatgtgtgaatgtgtgacttggcatt 472
Query: 541 agtagtccttgctctaagactctaggactgaaaacccttggaggagttatcacatcccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agtagtccttgctctaagactctaggactgaaaacccttggaggagttatcacatcccat 412
Query: 601 agaccca 607
|||||||
Sbjct: 411 agaccca 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_k01.g1 MSMg01no484_k01.g1 CHROMAT_FILE:
MSMg01no484_k01.g1 PHD_FILE: MSMg01no484_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:16 2005
(577 letters)
>mm_chr6_128434716_128435693
Length = 978
Score = 1075 bits (556), Expect = 0.0
Identities = 570/578 (98%), Gaps = 7/578 (1%)
Strand = Plus / Plus
Query: 1 atctagaacacagaaatgattgagcagaaagtggttaattgtgggaaaaccactttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 207 atctagaacacagaaatgattgagcagaaagtggttaattgtgggaaaacccct------ 260
Query: 61 gaaaatacaggctagacttaagttattttgattgggggtggggcctaagagacccagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatacaggctagacttaagttattttgattgggggtggggcctaagagacccagggc 320
Query: 121 tgaggcacagaagcgaggagtagactccagacttgctctgactgtgtgctcattgtatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggcacagaagcgaggagtagactccagacttgctctgactgtgtgctcattgtatgt 380
Query: 181 gctcagataaggaggagacatcgttaacactgttagcatagcgtaatcaagttcagagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcagataaggaggagacatcgttaacactgttagcatagcgtaatcaagttcagagtt 440
Query: 241 ggggctaaagggaagaatttcctactatgtactgtcccccaaccccattggggagattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggctaaagggaagaatttcctactatgtactgtcccccaaccccattggggagattat 500
Query: 301 ctacagcacataaaaaaaaa-tagatcaaatggtaggttttatgtcacatatccgtagca 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacagcacataaaaaaaaaatagatcaaatggtaggttttatgtcacatatccgtagca 560
Query: 360 agatgtgatcttaaaaaaatattgctattctacctttctagaataatccagctctgagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgtgatcttaaaaaaatattgctattctacctttctagaataatccagctctgagca 620
Query: 420 agccactttaaaggaaaattttagaactcatgaccaattttcccatgatgtcttcatcag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccactttaaaggaaaattttagaactcatgaccaattttcccatgatgtcttcatcag 680
Query: 480 aatggccctaaggcttgtttaaggtgctcccaagagatcaatatacaaaaacataattat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggccctaaggcttgtttaaggtgctcccaagagatcaatatacaaaaacataattat 740
Query: 540 aagtgaccatagactcacttttttcctggtgaaaagtt 577
||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtgaccatagactcacttttttcctggtgaaaagtt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
