Query= MSMg01no484_l21.b1 MSMg01no484_l21.b1 CHROMAT_FILE:
MSMg01no484_l21.b1 PHD_FILE: MSMg01no484_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:25 2005
(611 letters)
>mm_chr6_96679800_96680810
Length = 1011
Score = 1151 bits (595), Expect = 0.0
Identities = 607/611 (99%)
Strand = Plus / Minus
Query: 1 gaattcagtggctttcctgtatttcattttctatataaaattccttttgaaaacccaagc 60
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 811 gaattcagtggctcacctgtatttcattttctatataaaattccttttgaaaatccaagc 752
Query: 61 ccctcatgccaaagtgacagacctttaatggaaagcaccaactttgtatttcattacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccctcatgccaaagtgacagacctttaatggaaagcaccaactttgtatttcattacaca 692
Query: 121 tgggctcaagaatccaatttcatctcttataacctgcattgagaaagtctggcctgtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgggctcaagaatccaatttcatctcttataacctgcattgagaaagtctggcctgtcct 632
Query: 181 tttctcttctggagctgtttttgctcaccagagatagacagattctcttcctaaattaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttctcttctggagctgtttttgctcaccagagatagacagattctcttcctaaattaag 572
Query: 241 aactgataatgagagtacctgagggagttcctgccttcagaacaggtccctgcagcccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aactgataatgagagtacctgagggagttcctgccttcagaacaggtccctgcagcccac 512
Query: 301 acatagcacatctgtgttccactggagtctgtgcatatttctgtatcctcactctgccaa 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acatagcacatctgtgttctactggagtctgtgcatatttctgtatcctcactctgccaa 452
Query: 361 gacttcacggatgtgtaagaattctacaagtgagagggcagaggatgaatgtcccaacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gacttcacggatgtgtaagaattctacaagtgagagggcagaggatgaatgtcccaacta 392
Query: 421 ggaagctcaacaagtagaaaaattgaagtgacattttaaagctttaggtgaagctagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaagctcaacaagtagaaaaattgaagtgacattttaaagctttaggtgaagctagatt 332
Query: 481 atattgtcttttaggcttgattcttgttttttcctcatttaacctttttcttttattgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atattgtcttttaggcttgattcttgttttttcctcatttaacctttttcttttattgta 272
Query: 541 aacttaaagaatagacccctaaagagggtctggtcacatggtctattttttccttggtcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aacttaaagaatagacccctaaagagggtctggtcacatggtctattttttccttggtcc 212
Query: 601 actggggtctg 611
|||||||||||
Sbjct: 211 actggggtctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_l21.g1 MSMg01no484_l21.g1 CHROMAT_FILE:
MSMg01no484_l21.g1 PHD_FILE: MSMg01no484_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:25 2005
(576 letters)
>mm_chr6_96493771_96494745
Length = 975
Score = 1000 bits (517), Expect = 0.0
Identities = 565/587 (96%), Gaps = 13/587 (2%)
Strand = Plus / Plus
Query: 1 ccatggatactttatatggagaatgtgcataaatacggatgctcttaaaaatcactgaaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 201 ccatggatactttatatggagaatgtgcataaatacggacgctcttaaaaatcactggaa 260
Query: 61 tgaacactcaacaacagcatctgaaatgggtactctctgtcaattgaatgcaaacaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tgaacactcaacaacagcatctgaaatgggtactctctgtcaattgaatgcaaacgagtt 320
Query: 121 cttctctgtttggatcatagtcatggttccttgactcaagagaatgaccttcaaaactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctctgtttggatcatagtcatggttccttgactcaagagaatgaccttcaaaactat 380
Query: 181 atgcatcaggatttcctagaaagctgcttaaaacactcctcacacaggaacttggaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatcaggatttcctagaaagctgcttaaaacactcctcacacaggaacttggaagct 440
Query: 241 atacatgagattgcaagagaaaagaaccccctggcatctataactctttagtactcctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacatgagattgcaagagaaaagaaccccctggcatctataactctttagtactcctac 500
Query: 301 -aggcaaaacaaacaaacatgaaatacatgcagacaattcaagtaccccttgggaaattc 359
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 cag-caaaacaaacaaacatgaaatacatgcagacaattcaagtatcccttgggaaattc 559
Query: 360 agtaacctccagtgaagtaagcaataggcacactttttaggcaagtccctatttttacac 419
|||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 560 agtaaccttcagtgaagtaagcagtaggcacactttttag-caagtccctatttttacac 618
Query: 420 actcacttgttctgctacttttctgtataaagaaagttttattagtatctagctacactc 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actcacttgctctgctacttttctgtataaagaaagttttattagtatctagctacactc 678
Query: 480 atttacttatttagtttctaggtcttcttttacactaagtcacacacacacacacacaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atttacttatttagtttctaggtcttcttttacactaagtcacacacacacacacacaca 738
Query: 540 cacacacacacacacat----------gaacaaaaagttacctcgaa 576
|||||||||||||||| |||||||||||| |||||||
Sbjct: 739 cacacacacacacacacacacacacacgaacaaaaagttgcctcgaa 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
