BAC Information

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BAC

Clone NameMSMg01-485L12
Chromosome6 (Build37)
Map Location 22,859,580 - 22,859,815
singlet/doubletsinglet
Overlap genePtprz1
Upstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
Downstream geneAass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485L12.T7 (MSMg01no485_l12.b1)MSMg01-485L12.TJ (MSMg01no485_l12.g1)
ACCAG565096AG565097
length1,198723
length of high quality
(start - end)
---238 (79 - 316)
definitionCHROMAT_FILE: MSMg01no485_l12.b1 PHD_FILE: MSMg01no485_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:46 2005CHROMAT_FILE: MSMg01no485_l12.g1 PHD_FILE: MSMg01no485_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTAACACTCTTAAGGGTCCAGCGCCCTGGAACACGAGCCTCCCCTTCC
CTCAAGGACGGGGGGATGGGAGATCGCGCACAGCCCTACCTAGAGTAGTT
TTAAGACCGTGGAGTCGTTGCCTCACTCCCTCTCCGATACCCTTTGTGAT
ACTCTCTTCGTTACCAGTACCCGCGTGCGGGGTGGGTTGCCGCGCGAGTG
GTTCCCGTATCGTTCCTGTTTTTACGTCTTTACTGCGCTGTCGTTATTCT
GTCCTACAGCCGCCTACCCGCATGTATATCTCGATTGTATATAGGTACTA
CTGTGAGTGCGCGTTAGAGACGGAGCCACAACCGCAGGTCTCCATCGGTG
TGCGATGGCGTGGTGTTTTAGCGCATATCGTCGCCTACGTATGTGTAGTG
CGCAGCGCCTGTGTTCCGAGTGTACAACACGCACTTGCCGCCACTATCCA
CTACCGATTCGACTTCCCGCTGTCTCCTCCTCCTCTTCGTCTTACTTTGT
CTATTATGTTCCCCCTCTGTCGTGAACGTATCGCCCTGTCGGGGGCGCCT
GCGCCCACGGACTGGCGGCGCGTCGACGAATCTCATAAGAACGGTGTACG
TGGAGGCTCCGCTGAGGTGGCGCTGACTCCGCCCTGTGCGAGTGTAGCCA
CTAAGTCCTGTGCGGTCGTGCACCGCCGCACGCAGGTCCAGTGTGCTCTG
GTGGCATTCTGCTCGACGCTCCACGAGCTCAATTCTCATTGCCATGTAGT
GAGGATGAATTATGAGACACCCGACGACATACTAGCGACAACAAATATAG
GTAGTCTGCCGGACCTACTCTCGCCCCGATATAGANCGTGCATGTACATC
CNCCTCCTCTCTCACACTGCTGATTATCGGTCGCGCTGCTGTGTTGTCTC
TGGTTCACCTNACCGTCCATGTGTGCGGTGGCGCCGCGACAGCACACCAA
TTGAGTGCGTGTGAGTACCACTCATCACGTAGCTGTTACGAATATGCGCT
GAACAGTGTACTCGCATCCTGTATGATCGCGTCGCCTCTGATAATGACGA
CGCGCGCTCCATAAGACAGTCAACTCGCGACGGCAGTGTGTGTGACAGAC
GTATNAGATGATGNGCGTCAGAGTCCAGATGTATGCCGCAGCACGCGCGC
CATCTCACCTGCTCATGTGCGCTGCGTCGCGTACACAGCTCGTCGATG
NNNCCTCATGATATGGGAGGCCTGGGGGCGCCTGGCTTCAACAAAAGGNG
AACNANAGAAGGTTCCCAAAAAAGAGGNATGTCTTGAGGATTTTTCACAA
AAACAATCAATCCTTTTCAGGGCTTGACGCCAGAGTAACTTCCTGCACTC
AGTCAGTGCATCGCCATGGACACACACGGATGCCTTTCACTCTCTGCCTC
TCCGCAGGGTTGGATTTTGTGATGAGAAGAAAACAGCCATAGTGTTGCTG
AAGCACTCTTGGGCCCTTAGACAACATCGACCTTTGTATTATGAATGATT
ATCAGAAAGTTAGATAATTANATAAAAAAAGATTTCCATGTACCAGACAA
AAGAAGACCACTACAGACTCCAGAAAATACCAAGCAACCATAAACAAATG
GTGTGATTTAAGGCAGGCCCAAAGATGTAAGGCTCTGAGTTGGAGTAGCC
CAGGGGGAAGCTCCAGGTCTGTGTTTCTCTTAAATGGACAGCACATACAA
AGCAAAGACGGTAAGGATGTAACTAGCTAAAACATCCATCAGACAGCTGG
ATAATTTGGCTGGATAATTCCAATCCTTGATTCCAGTTTTTCCCAGCAAG
TAAACCAGATTAGTTTTGTCTGAACATTATGAATTATTTCCAAAATGCTT
TAATTTGTGTAAACAAACCTAGAATCCTTTGGGTGAATGTTTGAAATTTC
ATTAATGGTACACGATTGTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_l12.g1 MSMg01no485_l12.g1 CHROMAT_FILE:
MSMg01no485_l12.g1 PHD_FILE: MSMg01no485_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:46 2005
         (238 letters)



>mm_chr6_22859380_22860017
          Length = 638

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcttgaggatttttcacaaaaacaatcaatccttttcagggcttgacgccagagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgtcttgaggatttttcacaaaaacaatcaatccttttcagggcttgacgccagagtaa 377

                                                                       
Query: 61  cttcctgcactcagtcagtgcatcgccatggacacacacggatgcctttcactctctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttcctgcactcagtcagtgcatcgccatggacacacacggatgcctttcactctctgcc 317

                                                                       
Query: 121 tctccgcagggttggattttgtgatgagaagaaaacagccatagtgttgctgaagcactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tctccgcagggttggattttgtgatgagaagaaaacagccatagtgttgctgaagcactc 257

                                                                   
Query: 181 ttgggcccttagacaacatcgacctttgtattatgaatgattatcagaaagttaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgggcccttagacaacatcgacctttgtattatgaatgattatcagaaagttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)