BAC Information

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BAC

Clone NameMSMg01-485M10
Chromosome6 (Build37)
Map Location 18,103,391 - 18,103,970
singlet/doubletsinglet
Overlap genenone
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426
Downstream geneLOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485M10.T7 (MSMg01no485_m10.b1)MSMg01-485M10.TJ (MSMg01no485_m10.g1)
ACCAG565140AG565141
length1,499734
length of high quality
(start - end)
---579 (76 - 654)
definitionCHROMAT_FILE: MSMg01no485_m10.b1 PHD_FILE: MSMg01no485_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:51 2005CHROMAT_FILE: MSMg01no485_m10.g1 PHD_FILE: MSMg01no485_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCGGATTTTTTAATTTNTATNATGNTTTTNTGTTGCTTTATATGTTCTT
GTATAGAGGTGTGTATATATCTCTCTTCTACACAGAGAGAAGCGAGACGT
AGAGACTACGAGCGCCACACANGTGTCTCTACATCTCGACATACGGATGA
NGTGAGCAGGAGGAGAGCGTGCTACGCCTGACTATTCGCACTATGACGAA
CACAGTAAGATTATTGATGATGACATTNCAACATAGAGATCAGCACAGTA
TAACTGATACATTGTATACTAAGACGTGTATGAGTGATAGCAACCTACGT
GTGTCGCTGAGCGCCAGGCGTCTATCATGCGATGTATTGCGCTATCTGAT
AGCGCATACTCGACGCCGANCACACTCTTGTCACGCGCGCTGCCAGTATT
AATCAGACGCGCNCCTTACCTCTAGAGTCTGCTGTTTTCTATGCGTATTA
TATTGTGTAGCGGATCATGTGTCGTGTGTATGTGTGAGTGCGCCGGTCAC
TTAGTAGTGTCTTAAATAGGCACTGAGAGAGGAGGTGTATGTAGAATCGT
ATAGTATGCCTGCAGTATAANTCATACAATCANGACTGCTGTATTGTCAC
TCGACCGCACGTGATCAGACTTCTATAAATCACTGCGTTATTGTGTTGCG
CGGCGGTCGCGTACGTGATCATTCATGCTCCNNCCTACGCCGCGCTCGTG
TTATATGTCTATGTGACGTGCCGGCCTCTCGCCGTACTTCATCGGACCGT
TTCGTGGTTTTGCTGTGCTGCAAGCAGAGCTGGTCGGTAGTTTATAGTAG
TCTTGTATACTCCTATAACACACACAGTACTGCCATATGTCATATAATAC
TAGTTGCGCACGTGGATCTGCCGACGACGAGTAGNTCATACGTATGCGTT
GCATACTGCTAGTACGAGGTATTATTGAGTCAGTAATCATCATACTGCTC
ATGATCCCGAGCATATGCGTGTAGTACTCATCTATACTTATTACGCATAC
TAATGTAACGACGCCTCTGTATGCGCCATCACACCATTACGACGTATATC
TGAGATGCTCGCACGCGACTGCTGTTAACGCCAACGTCGTATAGATAGTG
ATGTGTTGTATGATGGCGTTTGTTGTGACAGCACTATGTGACCTAGCATT
GATGATGACGCATACTTGCCGCGCGATGTACATTCTCCATAGCGTGCTAC
GTATATGAAATCCTAGCCNCTGCTCTCATCGTTTATATTATTACCGTAGC
TAAACGACCTAACCATACGATAGGCATATCGACGCCGCACGTGAAGCATA
CGTGAAGTGGTCGCTGTGTATTACTCACTTAACGAATTCGTCGTCATGCT
CAGTCGAGTGAACATATTACCGGTACAGCGCGCGCAGTTAGACGTGANTA
TATTAGTAACAAAGCGGAGCGTGCGGATCACGCTCTTAGTTATATCACGT
GTCGCTTACTACANATCATACTCCAATCCACCTAGTAGTCTTGCTTCTN
GCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCTCTGTTTTGAGGGAAGGAAGG
GAAGATCTGTGCATTGAATAAGTTCCAGAACCTGATATAACTCTTCATAT
TCCTCAGCCTGTCTTTGATAGGAGTGAGAAATATCCAGGATCTTTTGAGA
GAAACTTGGCTGTGATATTTCCCATTCTTGAAGCTTCTGGATTTTGTTTG
TTTATTTGTTTGCTTTTGTTTTATATTTATAATTAGTATTGTTAATAAGT
AAAAATTAAATGCAATCCTTATTGTACACACTTTTTAAAAAGAATAACTG
ATGATAAATTAGTGCTAGTACTGAAAGAATGTAGTTATACAACTGGTTCA
AAGTTATCTGAGGGAAATATTTTCTTACTCTCAACAGGTATTTTTTGTGA
CTGTATCTAATAGCTGTAGAGAACATCTTGTTTTTGACACTAATCCACAA
GTGGGGTAGTCATGCAGTCCTGGGGTAGGGATAAAGAAGTGGAGATTTAA
GACTACAATAGATTTTGAGAAGGATATTAATGCTCACCACTTACTTTAGG
ATCCAAAAGCTAATACTTTGCTTTGTCCAAGTTTTAGTCAAACTTAATTC
TAAGATATTAGATGTTGCACCAGCGTCTGCCTTTTTTCCCCCCTGCATCC
TCACAAGACAAATAGCCGATAGGCTTTTCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_m10.g1 MSMg01no485_m10.g1 CHROMAT_FILE:
MSMg01no485_m10.g1 PHD_FILE: MSMg01no485_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:51 2005
         (579 letters)



>mm_chr6_18103191_18104169
          Length = 979

 Score = 1075 bits (556), Expect = 0.0
 Identities = 574/580 (98%), Gaps = 1/580 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctctgttttgagggaaggaagggaagatctgtgcattgaataagttccagaacctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctctgttttgagggaaggaagggaagatctgtgcattgaataagttccagaacctga 260

                                                                       
Query: 61  tataactcttcatattcctcagcctgtctttgataggagtgagaaatatccaggatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataactcttcatattcctcagcctgtctttgataggagtgagaaatatccaggatcttt 320

                                                                       
Query: 121 tgagagaaacttggctgtgatatttcccattcttgaagcttctggattttgtttgtttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagaaacttggctgtgatatttcccattcttgaagcttctggattttgtttgtttat 380

                                                                       
Query: 181 ttgtttgcttttgttttatatttataattagtattgttaataagtaaaaattaaatgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttgcttttgttttatatttataattagtattgttaataagtaaaaattaaatgcaa 440

                                                                       
Query: 241 tccttattgtacacactttttaaaaagaataactgatgataaattagtgctagtactgaa 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tcgagattgtacacactttttaaaaagaataactgatgataaattagtgctagtagtgaa 500

                                                                       
Query: 301 agaatgtagttatacaactggttcaaagttatctgagggaaatattttcttactctcaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 agaatgtagttatacaactggttcaaagttatctgagggaaatattttcttattctcaac 560

                                                                       
Query: 361 aggtatttttt-gtgactgtatctaatagctgtagagaacatcttgtttttgacactaat 419
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtatttttttgtgactgtatctaatagctgtagagaacatcttgtttttgacactaat 620

                                                                       
Query: 420 ccacaagtggggtagtcatgcagtcctggggtagggataaagaagtggagatttaagact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacaagtggggtagtcatgcagtcctggggtagggataaagaagtggagatttaagact 680

                                                                       
Query: 480 acaatagattttgagaaggatattaatgctcaccacttactttaggatccaaaagctaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaatagattttgagaaggatattaatgctcaccacttactttaggatccaaaagctaat 740

                                                   
Query: 540 actttgctttgtccaagttttagtcaaacttaattctaag 579
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actttgctttgtccaagttttagtcaaacttaattctaag 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)