BAC Information

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BAC

Clone NameMSMg01-486C23
Chromosome6 (Build37)
Map Location 45,151,111 - 45,292,587
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486C23.T7 (MSMg01no486_c23.b1)MSMg01-486C23.TJ (MSMg01no486_c23.g1)
ACCAG565447AG565448
length771800
length of high quality
(start - end)		576 (52 - 627)585 (69 - 653)
definitionCHROMAT_FILE: MSMg01no486_c23.b1 PHD_FILE: MSMg01no486_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:25 2005CHROMAT_FILE: MSMg01no486_c23.g1 PHD_FILE: MSMg01no486_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,151,111 - 45,151,682)(45,292,003 - 45,292,587)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCTGCAATAATTATGTATTAGAAGAAAAATGCTTCAT
TAAGCAACTACTGGACTTTTATATGTATTTAAATAACTGATTCTAAGTAA
ATCTGTGCACCCTCCCAGTGGTTGCAGTTGGTTTTTTGACCATGTTAATG
AATAGTTAGCTTTGTGCCTTAAGGTTGAGAGATACCTGAGCAACACAGCA
CAGCAGTGGCTTCCATGTCACAGCAGACCTTCTCATGTCCATCCATACCT
ACACTCTTGCTCCACATAAAGAATGAGTATTATATGATGCCTTACCTGTA
GAATTCAGGAGTCTCAGGTCTTCATGTCTGCTTTCTCTTGGTGTGTAGTT
CTGTCCTATTTCCAGGCTTCCATTTCACCACTACTTGGACTATCAGCTTC
CAAACGCTGACACCATTGCATATACTAGCAAGATTTTATCGAAAGGACCC
AGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAA
GTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCTCAATGGAG
GAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGNCACCCTATANGT
GGAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTG
CATATGTATCAAAAGATGCCCTAGTCGGCCATCACTGGAAAGAGAAGCCC
ATTGGACTTGCAAACTGTATN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGGTGTTTATAAATCATTATTTTTATTACC
AGTGCATGCTGTCATGAAAGATGGCTATGAAAGCAACCCATTTAAATCAT
ATATCACATATAATCTATATGACCATCTAGTTCCCAGATATACAAAAGCA
CAAAAGAGGATTTAAATAATTAAATAGAAAAAAAAGTAAGCTTAAGATTG
TTTCTTAAAATAAGAAAACAGGAATTGCAGTTTTATTTTTATATCAAGGA
AGCCTGTTGACTCTATAGCAATATATAAGCCACTAAAGTAATTTCAGAAG
CTTTTTATCTTAGAAAAGAATGGTAACATAATCTTGGGGCATAAATGGGA
AGAGAAGGGTTTCAAAATATATTATCATAAATCCTGAACTAGAAGGGAAA
CAAGATACTCTCCAATGTGCTAAATTATAATTCCAGTAGAGAAAGTGTGT
GAGCAATGAGAAACCCAGCTACCTAAAGATTTCAGTATTAAATTTTACTT
TACCTTTTCTTTAATTTTTGAGATTATTTTATAATTGCATTATGTGTTAC
TTCCATTTCCTCCTCCAAAATTTTCCTTATATCCCTCTTTGCTCTATTTC
CAACTCAAAGACACTTTTTTCATTGAGTATTTTTATAGACATATGTGGAT
ATGTGTATCCACACGACATTCTAATATAATCAAGCTTATATATATATATA
TTACCAGTGCTAAAAAATGATGCAGTGGAATCCTAAGTTTTATAAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_c23.b1 MSMg01no486_c23.b1 CHROMAT_FILE:
MSMg01no486_c23.b1 PHD_FILE: MSMg01no486_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:25 2005
         (576 letters)



>mm_chr6_45150907_45151882
          Length = 976

 Score = 1036 bits (536), Expect = 0.0
 Identities = 563/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgcaataattatgtattagaagaaaaatgcttcattaagcaactactgga 64
           ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 205 gaattctttctgcaataattatgtattagaagaaaaatgtttcattaaacaacttctgga 264

                                                                       
Query: 65  cttttatatgtatttaaataactgattctaagtaaatctgtgcaccctcccagtggttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttttatatgtatttaaataactgattctaagtaaatctgtgcaccctcccagtggttgc 324

                                                                       
Query: 125 agttggttttttgaccatgttaatgaatagttagctttgtgccttaaggttgagagatac 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttgcttttttgaccatgttaatgaatagttagctttgtgccttaaggttgagagatac 384

                                                                       
Query: 185 ctgagcaacacagcacagcagtggcttccatgtcacagcagaccttctcatgtccatcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgagcaacacagcacagcagtggcttccatgtcacagcagaccttctcatgtccatcca 444

                                                                       
Query: 245 tacctacactcttgctccacataaagaatgagtattatatgatgccttacctgtagaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacctacactcttgctccacataaagaatgagtattatatgatgccttacctgtagaatt 504

                                                                       
Query: 305 caggagtctcaggtcttcatgtctgctttctcttggtgtgtagttctgtcctatttccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggagtctcaggtcttcatgtctgctttctcttggtgtgtagttctgtcctatttccag 564

                                                                       
Query: 365 gcttccatttcaccactacttggactatcagcttccaaacgctgacaccattgcatatac 424
           |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 565 gcttccatttcaccactacttggactgtcagcttccaaacgttgacacgattgcatatac 624

                                                                       
Query: 425 tagcaagattttatcgaaaggacccagatgtagctgtctcttgtgagactatgctggggc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 tagcaagattttatcgaaaggacccagatgtagctgtctcttgtgagactatgccggggc 684

                                                                       
Query: 485 ctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggctctcaa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 ctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggctcacaa 744

                                           
Query: 545 tggaggagctagagaaagtacccaaggagcta 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 tggaggagctagagaaagtacccaaggagcta 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_c23.g1 MSMg01no486_c23.g1 CHROMAT_FILE:
MSMg01no486_c23.g1 PHD_FILE: MSMg01no486_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:25 2005
         (585 letters)



>mm_chr6_45291899_45292883
          Length = 985

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtgtttataaatcattatttttattaccagtgcatgctgtcatgaaagatggctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agtggtgtttataaatcattatttttattaccagtgcatgctgtcatgaaagatggctat 630

                                                                       
Query: 61  gaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagttcccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagttcccaga 570

                                                                       
Query: 121 tatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaagcttaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 569 tatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaaacttaagat 510

                                                                       
Query: 181 tgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaagcctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaagcctgtt 450

                                                                       
Query: 241 gactctatagcaatatataagccactaaagtaatttcagaagctttttatcttagaaaag 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 449 gactctatagcaatatataagccactaaagtaatttcaaaagctttttatcttagaaaag 390

                                                                       
Query: 301 aatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatattatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatattatcat 330

                                                                       
Query: 361 aaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataattccagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataattccagta 270

                                                                       
Query: 421 gagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaattttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaattttac 210

                                                                       
Query: 481 tttaccttttctttaatttttgagattattttataattgcattatgtgttacttccattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttaccttttctttaatttttgagattattttataattgcattatgtgttacttccattt 150

                                                        
Query: 541 cctcctccaaaattttccttatatccctctttgctctatttccaa 585
           |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 149 cctcctccaaaatttttcatatatccctctttgctctatttccaa 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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