BAC Information

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BAC

Clone NameMSMg01-486G22
Chromosome6 (Build37)
Map Location 14,726,696 - 14,727,019
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797, Ppp1r3a
Downstream geneFoxp2, LOC100040568, Mdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486G22.T7 (MSMg01no486_g22.b1)MSMg01-486G22.TJ (MSMg01no486_g22.g1)
ACCAG565637AG565638
length747786
length of high quality
(start - end)		665 (54 - 718)607 (72 - 678)
definitionCHROMAT_FILE: MSMg01no486_g22.b1 PHD_FILE: MSMg01no486_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:44 2005CHROMAT_FILE: MSMg01no486_g22.g1 PHD_FILE: MSMg01no486_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTAAGATTTTCCAAGCTAAGTCACTCCCTTACACAGGAA
TTTACCATCACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGA
AACTATAGCAGAGTTACACCCATACACACGTATTTACAATGGTCTAAGGG
GAAGGTGGACTATACAAGAGACTAAAATAGGAACTATGGCAAGGGCACGA
AGCTCTTGACCCTGGCTTCTAAGATTAGTGAATCTTAGGTGGAGCCCTTG
TTGATCCCAGCTGTTATCAATGTATTCTATCCCAGGTGGTTCCCATTAGA
CCTTTTGTGTTTGCATTCCTCTGTTTTAAGTAAGATTCTGGTTACCTCAA
TTGTACCTTGCGAATTTGTCACCCAACTTCCTTATTGTCCTCTGCATAAA
AAGTCTGATGCTCGATTCGAAAATTACACTCAGATCTCACACGACCTCTC
CTGTGTGTGTCTGTTTGTCATTCATCCATGCTTTGCCCACCTGCGTCGAG
AGACCCGTTCCACGCAGACACAGGGACCCAGAGGGTCTGCGGCAATGGTC
ATATGGTCCAGGTGTTCAGCAAAGGCTGCTGCTGCTGCTCATCCTCCTGA
AGTGTCATTCTCAGCTACATGTAAATCACTATGTACAAGTAAACAGGCAC
AACCATCATATTTCTGCATAAATTTGCTCTCATATAAGTACCAAGGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTATAACCACTCTGGAAATCCA
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAAATCCTAGGATACCCAAGATATAAGATACAATTTCCTAAA
CACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCT
CCTTATAAGTGGGAACAAAACACCCTTGGAAGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_g22.b1 MSMg01no486_g22.b1 CHROMAT_FILE:
MSMg01no486_g22.b1 PHD_FILE: MSMg01no486_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:44 2005
         (665 letters)



>mm_chr6_14725955_14727019
          Length = 1065

 Score =  549 bits (284), Expect = e-160
 Identities = 314/324 (96%)
 Strand = Plus / Minus

                                                                        
Query: 342  cctcaattgtaccttgcgaatttgtcacccaacttccttattgtcctctgcataaaaagt 401
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cctcaattgtaccttgcaaatttgtcacccaacttccttattgtcctctgcataaaaagt 1006

                                                                        
Query: 402  ctgatgctcgattcgaaaattacactcagatctcacacgacctctcctgtgtgtgtctgt 461
            ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1005 ctgatgctcaattcgaaaattacactcagatctcacaggacctctcctgtgtgtgtctgt 946

                                                                        
Query: 462  ttgtcattcatccatgctttgcccacctgcgtcgagagacccgttccacgcagacacagg 521
            |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 945  ttgtcattcatccacgctttgcccatctgcgtcgagagacccattccacgcagacacagg 886

                                                                        
Query: 522  gacccagagggtctgcggcaatggtcatatggtccaggtgttcagcaaaggctgctgctg 581
            || |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 885  gatccagagggtctgtggcaatggtcatatggtccagttgttcagcaaaggctgctgttg 826

                                                                        
Query: 582  ctgctcatcctcctgaagtgtcattctcagctacatgtaaatcactatgtacaagtaaac 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  ctgctcatcctcctgaagtgtcattctcagctacatgtaaatcactatgtacaagtaaac 766

                                    
Query: 642  aggcacaaccatcatatttctgca 665
            ||||||||||||||||||||||||
Sbjct: 765  aggcacaaccatcatatttctgca 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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