Query= MSMg01no486_o14.b1 MSMg01no486_o14.b1 CHROMAT_FILE:
MSMg01no486_o14.b1 PHD_FILE: MSMg01no486_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:21 2005
(621 letters)
>mm_chr6_81530826_81531846
Length = 1021
Score = 1098 bits (568), Expect = 0.0
Identities = 608/622 (97%), Gaps = 4/622 (0%)
Strand = Plus / Minus
Query: 1 ttcttgccat-tacctcctgttggccaaaatatttgttttgaaatctgccttgcaggccc 59
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttcttgccatctagctcctgttggccaaaatatttgttttgaaatctgccttgcaggccc 564
Query: 60 cactcactgtaaattcctttatctgatagagaatgaactctgttacaataagtcaaaccc 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 cactcactgtaaattcctttatctgctagagaatgaactctgttacaataagtcaaaccc 504
Query: 120 aaccattgggcacattggttgccatagttaatattaacacaaaatgcagtgaggaaattg 179
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaccattgggcacattggtggtcatagttaatattaacacaaaatgcagtgaggaaattg 444
Query: 180 actccactggccctttacagaccctacagggcaggataatatctatagtcctacagatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actccactggccctttacagaccctacagggcaggataatatctatagtcctacagatct 384
Query: 240 cctctgtaggactatacagttgtctgtataggaattcagttgtctgaagaactcagcact 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctctgtaggactctacagttgtctgtataggaattcagttgtctgaagaactcagcact 324
Query: 300 ggtagcttttttttttctgaaatgacagggagaatggcaaatgatcttgaaatggtatta 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtagc-tttttttttctgaaatgacagggagaatggcaaatgatcttgaaatggtatta 265
Query: 360 gaagctacacttcaatgtatcagtgttcaatcacaagtcttgtatagagataaaaatgag 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 gaagctacacttcaatgtatcagtgttcaatcacgagtcttgtatagagataaaaatgag 205
Query: 420 catagagattgggggatggtttaattggtaaagtacctgctttgcaagcatgaggaccta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 catagagattgggggatggtttaattggtaaagtacctgctttgcaagcatgagaaccta 145
Query: 480 cctgagttcagaccccaagcatctacccgaaagccaggtgtgacagtaagcataggtaac 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cctgagttcagaccccaagcatctacccgaaagccaggtgtgacagtaagcataggtaat 85
Query: 540 ctagtgccataggtagggcagagagaggtaaatctctgaagctgctaaccagccagtcca 599
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 84 ctagtgccataggtagggc--agagaggtaaatccctgaagctgctaaccagccagtcca 27
Query: 600 tcccaagtggtaagcaccaggt 621
|||||| |||||||||||||||
Sbjct: 26 tcccaaatggtaagcaccaggt 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_o14.g1 MSMg01no486_o14.g1 CHROMAT_FILE:
MSMg01no486_o14.g1 PHD_FILE: MSMg01no486_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:21 2005
(666 letters)
>mm_chr6_81375753_81376818
Length = 1066
Score = 1265 bits (654), Expect = 0.0
Identities = 663/666 (99%)
Strand = Plus / Plus
Query: 1 aggccaagagttatatttgattcgaacatacattggaaatggttatagatgttgaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccaagagttatatttgattcgaacatacattggaaatggttatagatgttgaagaat 260
Query: 61 gtgataagtatggggtcttattttgcgagtgctatctaggagccagcagaaggtggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgataagtatggggtcttattttgcgagtgctatctaggagccagcagaaggtggaaga 320
Query: 121 agctcggaacctaatgcagctttcacagtccttcagaagtaagctggcatctgagactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcggaacctaatgcagctttcacagtccttcagaagtaagctggcatctgagactgc 380
Query: 181 agctttggagtataaagcatggctacagacaggggtacatttgaaaggggaaagagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctttggagtataaagcatggctacagacaggggtacatttgaaaggggaaagagaaag 440
Query: 241 aagaaattgaaatacagaggatatgtcatagtctatgtaaccctaaagagaggactgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaattgaaatacagaggatatgtcatagtctatgtaaccctaaagagaggactgaga 500
Query: 301 ggacgttaaacacttcccagttcattttttctctgacttcccatagctctaaatgtgtgg 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgttaaacacttcccagttcattttttctctgacttcccatagctctaaatgtgtgt 560
Query: 361 cagcttgccttcaccctgctgtagaccaatctaaacagctgaatagcagattcaagcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcttgccttcaccctgctgtagaccaatctaaacagctgaatagcagattcaagcaca 620
Query: 421 caatcagacctgtagattcttggtctgggctttctgcccctttctttacatatccaagtt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 caatcagacctgtagattcttggtctgggctttctgcccctttctttacatatctaagtt 680
Query: 481 tctttcatatcaatgctagaatcaggaccctttgctgacagtcctgtatacataagacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttcatatcaatgctagaatcaggaccctttgctgacagtcctgtatacataagacaa 740
Query: 541 ctatgggctccccacacacccatgaatgactaattcaagttctggttctccagtgatgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctatgggctccccacacacccatgaatgactaattcaagttctggttctccagtgatgtc 800
Query: 601 cctcttgcccttctttttgttgtgagtctggcctagggacaagatgaatatcttgaacat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctcttgcccttctttttgttgtgagtctggcctagggacaagatgaatatcttgaacat 860
Query: 661 tttact 666
||||||
Sbjct: 861 tttact 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
