BAC Information

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BAC

Clone NameMSMg01-488B23
Chromosome6 (Build37)
Map Location 57,959,972 - 57,960,615
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17
Downstream geneEG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488B23.T7 (MSMg01no488_b23.b1)MSMg01-488B23.TJ (MSMg01no488_b23.g1)
ACCAG566921AG566922
length707725
length of high quality
(start - end)		648 (37 - 684)645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no488_b23.b1 PHD_FILE: MSMg01no488_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:56 2005CHROMAT_FILE: MSMg01no488_b23.g1 PHD_FILE: MSMg01no488_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTCTCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTT
TCTCTGCATCTAACAAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATAATGGATTACCTTGATGGATGTCCATATATTGAGCCATCCCTGCAT
CCCTGGGATGAAACCTACTTGATCAGGATGGATGATTGTTTTGATATGTT
CTTGGATTCGGTTAGCGAGAACTTTATTTAAGATTTTTTCATCGATATTC
ATAAGGGAAATTGTTCAGAAATTCTCTATCTTTGTTGTGTTTTCTTTTGT
GGTTTAGGTATCAGAGTAATTGTGGCTTCATAGATGAGTTGGGTAGAGTA
TCTTCTTTTTCTATTTCGTGGAATAGTTGGTGAAGAACTGGGATTAGGTC
TTCTTTGAAGGTCTGAAAGAACTCTGCACTAAACAAATCTGGTCCTGGGC
TTGTTTTGGTTGGGAGACTATTAGTGACTGCTTCTATTCCTTTAGGGTAT
ATAGGACTGTTTAGACCATTAACCTGATCTTGATTTAACTTTCGTACCTG
GTATCTGTCTAGAAACTTGTCCATTTCATCCAGGTTCTCCAGTTTTGTTG
AGTATAGCCTTTTGTAGAAAGATCTGATGGTGTTTTGGATTTCTTTGGGA
TATGTTG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCAGGATTAAGAAACTGATT
CAGATGTATCAAGAAAACACTATTTTCTTTTTAAATTTTTGGGGAGGATG
GATTAACAGGATTATCCTTTCTCCCTTTTCAGCCATCCATGATGTTATAT
TCCCTAACTTCCTCTTTTTTTTCTGTATTTATCTCCTTTTTCCTTAGCTA
AGAATCCATTCATTTTCCCGTTTCCCTGTTTGTTTAATTGTTCCCTGCTT
CTACTCCTGTTTACCTGCCTCCTTAGTTCTTTTGTATTTATCTGGCTCTT
CAACCCATAAGGAGCCCTACCTCTTCCATTTTCCTGATCAGATAGATACT
TGAGGTCTGCTATTTGCTCTCCATTGCTCCCACTGTCACCCTTATCCTGA
CAGTGGTTCCCTTTTCTTTCCATGTTTGTGTAGTTACTACAGACTACATA
TTCACATCTGAATATGTGGAGCTGGGAGCCTCCAACAACAGAGAATATGG
AATGCTAAGACAAACACTAATTTCAATACATCATGACAAAGACGAACTTG
TTGAAGTTGACCATATAGTGATGATGTTTGGGAATTTCTGTTTAAAAGCA
ATTCCTTCCCATGTAGTAGAAAACAAGGTCCCCTTGTTATCATTCATCAC
CAGCACCCAGACACTCTTTACTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_b23.g1 MSMg01no488_b23.g1 CHROMAT_FILE:
MSMg01no488_b23.g1 PHD_FILE: MSMg01no488_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:57 2005
         (645 letters)



>mm_chr6_57959772_57960815
          Length = 1044

 Score = 1216 bits (629), Expect = 0.0
 Identities = 641/645 (99%), Gaps = 1/645 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattcaggattaagaaactgattcagatgtatcaagaaaacactattttctttttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattcaggattaagaaactgattcagatgtatcaagaaaacactattttctttttaaat 260

                                                                       
Query: 61  ttttggggaggatggattaacaggattatcctttctcccttttcagccatccatgatgtt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttttggggaggatggattaacaggattatactttctcccttttcagccatccatgatgtt 320

                                                                       
Query: 121 atattccctaacttcctcttttttttctgtatttatctcctttttccttagctaagaatc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 atattccctaacttcctcttttttt-ctgtatttatctcctttttccttagctaagaatc 379

                                                                       
Query: 181 cattcattttcccgtttccctgtttgtttaattgttccctgcttctactcctgtttacct 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cattcattttcccttttccctgtttgtttaattgttccctgcttctactcctgtttacct 439

                                                                       
Query: 241 gcctccttagttcttttgtatttatctggctcttcaacccataaggagccctacctcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcctccttagttcttttgtatttatctggctcttcaacccataaggagccctacctcttc 499

                                                                       
Query: 301 cattttcctgatcagatagatacttgaggtctgctatttgctctccattgctcccactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattttcctgatcagatagatacttgaggtctgctatttgctctccattgctcccactgt 559

                                                                       
Query: 361 cacccttatcctgacagtggttcccttttctttccatgtttgtgtagttactacagacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacccttatcctgacagtggttcccttttctttccatgtttgtgtagttactacagacta 619

                                                                       
Query: 421 catattcacatctgaatatgtggagctgggagcctccaacaacagagaatatggaatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catattcacatctgaatatgtggagctgggagcctccaacaacagagaatatggaatgct 679

                                                                       
Query: 481 aagacaaacactaatttcaatacatcatgacaaagacgaacttgttgaagttgaccatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagacaaacactaatttcaatacatcatgacaaagacgaacttgttgaagttgaccatat 739

                                                                       
Query: 541 agtgatgatgtttgggaatttctgtttaaaagcaattccttcccatgtagtagaaaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 agtgatgatgtttgggaatttctgtttaaaagcaattccttcctatgtagtagaaaacaa 799

                                                        
Query: 601 ggtccccttgttatcattcatcaccagcacccagacactctttac 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggtccccttgttatcattcatcaccagcacccagacactctttac 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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