BAC Information

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BAC

Clone NameMSMg01-489J04
Chromosome6 (Build37)
Map Location 18,436,828 - 18,437,484
singlet/doubletsinglet
Overlap geneCttnbp2
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489J04.T7 (MSMg01no489_j04.b1)MSMg01-489J04.TJ (MSMg01no489_j04.g1)
ACCAG568023AG568024
length741734
length of high quality
(start - end)
646 (55 - 700)655 (80 - 734)
definitionCHROMAT_FILE: MSMg01no489_j04.b1 PHD_FILE: MSMg01no489_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:51 2005CHROMAT_FILE: MSMg01no489_j04.g1 PHD_FILE: MSMg01no489_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGCTACATATATANTCTGGTAAAGGACTAATATC
CAAAACATACAAAGAACTCAAAAAATAGCAAAGAATCAAACAATGCAGTC
AGTTAGTAGGCTAATGCAAAGAACAGAAACGTCCTCAAAAAAATGAAAAG
CAAAAGGCTAAGAAACATGAAAAGAAGTTCAAATTCACCAGTCATAGGAG
AAATGCAAAATGAAACTACATTGAGATTTCATCTTGTCCCAGCAGGCATG
ACAGTCATTAAATAAACAGAAAACAACCATAGATGAAATACCCTATAGTG
GGGAGAGGAAACTTATAGAGTCCACCTCCAGGAGAAAGACAGGACATCAA
GTTGAAGGGATGGGGTTGCCATTCCACAGGCAAAAACTCTGACCCATAAT
TGTCCCTGTCTAAAAGAACTTCAGGGCCAAAAATGGAGAAGAGCCTGAGG
GAAAGGAGGTCCAGTGACAGGCCCAACTTGGGATCCAGCTCCAAGGTCTG
ACAGTGTTACTGATGCGCTTAAAAAGCAGGATCCTAGCATGGCTACTCTC
TGAGAGGCCCAATAAGCAGCTAAAAGAGTCAGATGCAGACACTTACACCC
AACCAATGGACCACCCCTGTGGTAGAATTAAGGGAAGGATGGAAGAAGCA
GAGGAGGAGAGTGACCCTATAAGAAAACCAGCAGTATCAAC
AAAAACCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACCTGAGAAAAGTGT
TACCTTAGTCAGGTGGACTGAAGCCCTCAGATAAAAGCTTCAGCTGTGGT
CCAGGGTCTACAAAACAGGCTGACTGGATAGGATTTTGGAAAAGTATCTT
GCACTTACCAGGGTGGAACTTGTTAATTATGCTCTGTGACCTTTCCTCAG
TAGTAATTCCCAAACAATAAGGATTGCCAAGTTGGTGCCAGTTTCCTACC
ACCCAGCATAGCCCCTGATATGGTAGCAAAGCCCAAGGAATCTTTATTAG
TTAAATGTTGAATGACAATTGCTGAAAACATGTTTGGAAGAATAAGAGCA
GGCATGTGACTCCCCCCACCCCAAGACACAAATAAAAAGTTCTTAAGGAA
AAACAAGCAAAACCTTCGGCTCTGATATCAAATTGCTTTGTGAACAACTA
TTTTCTCTTAGAAATTAGGAGCCACTGCACACATACACTGGAGTAATGAG
TTTGACTAGCAACCCTAGGTCTTATGGAAGTCCCATTAATCCCTACGAAC
ACATACACACAATGTGTCTCCTCCACTTAGAGTCATCATCTTCACAAACG
TCCATTGTAATTGCTGCCTCAGATCAGTTTTCTCCTCTTCTCTGTCAATC
TGTTTCCAAAAGAGGCCATCGTAATCTCCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_j04.g1 MSMg01no489_j04.g1 CHROMAT_FILE:
MSMg01no489_j04.g1 PHD_FILE: MSMg01no489_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:51 2005
         (655 letters)



>mm_chr6_18436628_18437684
          Length = 1057

 Score = 1212 bits (627), Expect = 0.0
 Identities = 649/657 (98%), Gaps = 2/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttaacctgagaaaagtgttaccttagtcaggtggactgaagccctcagataaaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 cttttaacctgagaaaagtgttaccttagtcaggtggactgaagccctcagataaaagcc 260

                                                                       
Query: 61  tcagctgtggtccagggtctacaaaacaggctgactggataggattttggaaaagtatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctgtggtccagggtctacaaaacaggctgactggataggattttggaaaagtatct 320

                                                                       
Query: 121 tgcacttaccagggtggaacttgttaattatgctctgtgacctttcctcagtagtaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacttaccagggtggaacttgttaattatgctctgtgacctttcctcagtagtaattc 380

                                                                       
Query: 181 ccaaacaataaggattgccaagttggtgccagtttcctaccacccagcatagcccctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ccaaacaataaggattgccaagttggtgccagtttcctaccacccagcatagcccctgag 440

                                                                       
Query: 241 atggtagcaaagcccaaggaatctttattagttaaatgttgaatgacaattgctgaaaac 300
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atggcagcaaagcccaaggaatctttattagttaaatgttgaatggcaattgctgaaaac 500

                                                                       
Query: 301 atgtttggaagaataagagcaggcatgtgactccccccaccccaagacacaaataaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttggaagaataagagcaggcatgtgactccccccaccccaagacacaaataaaaag 560

                                                                       
Query: 361 ttcttaaggaaaaacaa--gcaaaaccttcggctctgatatcaaattgctttgtgaacaa 418
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttaaggaaaaacaaaagcaaaaccttcggctctgatatcaaattgctttgtgaacaa 620

                                                                       
Query: 419 ctattttctcttagaaattaggagccactgcacacatacactggagtaatgagtttgact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctattttctcttagaaattaggagccactgcacacatacactggagtaatgagtttgact 680

                                                                       
Query: 479 agcaaccctaggtcttatggaagtcccattaatccctacgaacacatacacacaatgtgt 538
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcaaccctaggtcttatgcaagtcccattaatccctacgaacacatacacacaatgtgt 740

                                                                       
Query: 539 ctcctccacttagagtcatcatcttcacaaacgtccattgtaattgctgcctcagatcag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ctcctccacttagagtcatcatcttcacaaacgtccattgtaattgctgactcagatcag 800

                                                                    
Query: 599 ttttctcctcttctctgtcaatctgtttccaaaagaggccatcgtaatctcccttaa 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttctcctcttctctgtcaatctgtttccaaaagaggccatcgtaatctcccttaa 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space:   675315
Effective search space used:   675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)