BAC Information

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BAC

Clone NameMSMg01-489N08
Chromosome6 (Build37)
Map Location 96,062,462 - 96,062,676
singlet/doubletsinglet
Overlap genenone
Upstream geneKbtbd8, LOC435912, Suclg2, LOC665886, LOC545867
Downstream geneC630007B19Rik, LOC100043685, 1700123L14Rik, C130034I18Rik, A130022J15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489N08.T7 (MSMg01no489_n08.b1)MSMg01-489N08.TJ (MSMg01no489_n08.g1)
ACCAG568220AG568221
length751735
length of high quality
(start - end)
215 (398 - 612)---
definitionCHROMAT_FILE: MSMg01no489_n08.b1 PHD_FILE: MSMg01no489_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:13 2005CHROMAT_FILE: MSMg01no489_n08.g1 PHD_FILE: MSMg01no489_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATCTTCCCATTAGAATGTGAGGAGTGGAATCTCGT
GATACTCTGCCTTGTGTCACATGCTTGAGCTCGAGCATCTTACCCTCCGG
AATTCATATATGACGCCATCCTACCATGACTGATATCGTGTGTGGTGCAT
GCTGGCCTCTCCGTCTGACATGGAAGCTAAAAGCTGGAGCGTGATGCTGA
CTCGTTGTGCTATACAGACTATCTCAGTCTGCCTCACATGATCCCCTGTC
TCTGATGCAATGTGAGCGTTGACATCTTTTGTCCTTCTGTACCATAATTG
CAGGTGAGCGTGTGTTCGCGCCATAGTGTGTGAGATGCAACTGTAGCTTC
TGAGTGTTTCCCTTTTCCATCTCACCACGCTATTTAAAGAGAGCCAAAAA
ATACTTTTTACAAAGAACCTTGAGCATATTTCTTCATCATCACTCAGTCT
CTGGTGCCAGCAATGATATATTTCTACTTATTAAACCTGTTATATAACTC
CAAAGATTTTTATTTTGCTTAGGAACACAAACACCAGTTATATTCCAGAT
AAATTGCATTTCGAGAAATAGCTGACAAAACAACTAACCGAAGAAAAAAT
CTGAATAAGCCCAGCTATATTCAGCTATTTTGCTGGCAACAAGATTCAGG
TTTAGACTGGGTGCATGTTTCACTTTCCCATTTACCGTTTGAAACCTAAA
G
AAAACCCGATGAAGTGGGAGGCCTGGNGGCCGCCTGTTTCAAAACTGGGG
TGACCTATAGAATATCAAAAAAAGGCATGGGGGNGAAGAGCCACTGCGAC
AGAGGCATTTGACGCCCTGACGCTACTGCTCGCTCCCTACGCACTCGCCA
CTCTCACGTATTTTGACACGCCTGAACACTTGTTTACTCAAGGGAGAGCT
GCTAGATCTGCAGCCATACCAGAGGACGTGGCGGCACGTCAGGATTATGT
TTCCCTCCACATCTGAGGGTAGTCGACCCGGTGTGCTCATACCCAGGGCA
AGATCCGCTCTGGTTTGTTTTTTTGACTGAACTGACAACTGGCTTGTGCT
GGAGCAGTACCTTTCCCGTCGATTGAGCCAAAGCTGTATCCTAAGACTGT
GCAACGGCTGTGCTGCACCCAGTATCATGCGGGTTCTGGTTAGACATCCC
CTATTACCGGAAGATACAATCCGTCCCCCTGCTCACCTACGGAGACTCCA
GATGTGTCACTTCTACGAGAGGGACTACCACGCACTCTTATTCTGTAGCG
CTATACCACTTGCGTATGTCAGTGTTAGGACCTTCAACGACTCACCCTGA
GTGCTCTAACGCGGGCTGAGAAATATCCTCACCTGTGGAGTCATTGATTA
GCCCGCTTACCCCCCGACTCTTAGAAAGCCCTCCACTTGAACAACCTGTG
TGAGGCTCATCTTGCGCAGGAGGACGAAAACCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_n08.b1 MSMg01no489_n08.b1 CHROMAT_FILE:
MSMg01no489_n08.b1 PHD_FILE: MSMg01no489_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:13 2005
         (215 letters)



>mm_chr6_96062262_96062876
          Length = 615

 Score =  393 bits (203), Expect = e-114
 Identities = 212/215 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgagtgtttcccttttccatctcaccacgctatttaaagagagccaaaaaatacttt 60
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 201 ttctgagtgtttcccttttccatctcagcatgctatttaaagagagccaaaaaatacttt 260

                                                                       
Query: 61  ttacaaagaaccttgagcatatttcttcatcatcactcagtctctggtgccagcaatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacaaagaaccttgagcatatttcttcatcatcactcagtctctggtgccagcaatgat 320

                                                                       
Query: 121 atatttctacttattaaacctgttatataactccaaagatttttattttgcttaggaaca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttctacttattaaacctgttaaataactccaaagatttttattttgcttaggaaca 380

                                              
Query: 181 caaacaccagttatattccagataaattgcatttc 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacaccagttatattccagataaattgcatttc 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)