Query= MSMg01no489_n14.b1 MSMg01no489_n14.b1 CHROMAT_FILE:
MSMg01no489_n14.b1 PHD_FILE: MSMg01no489_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:14 2005
(608 letters)
>mm_chr6_50085448_50086455
Length = 1008
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%)
Strand = Plus / Minus
Query: 142 gcatgtgttccatccttctttaatgtaataatggtcccaaatggcagggaaaatgataga 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gcatgtgttccatccttctttaatgtaataatggtcccaaatggcagggaaaatgataga 949
Query: 202 agctatgaagtattttacatgaaaagtgatcattttggtttcccaatgtaagcatgcatt 261
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 948 agctatgaagtattttacatgaaaagtgatcattttggtttcccaaggaaagcatgcatt 889
Query: 262 ctgtgataaggttgctaagatctatggtaagaacaaagagccacaaagaggcaaaaaaag 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ctgtgataaggttgctaagatctatggtaagaacaaagagccacaaagaggcaaaaaaag 829
Query: 322 aaatatgtaatagttttcctagaacttgaggtctgggcacctctctcccagggacttaga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaatatgtaatagttttcctagaacttgaggtctgggcacctctctcccagggacttaga 769
Query: 382 atgaaaccagatggataaggggcactactgtatccgttccctgaagattctgtttgcctc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgaaaccagatggataaggggcactactgtatccgttccctgaagattctgtttgcctc 709
Query: 442 cttcatgttacatctctcaaagaacaagaatttaccttctgacaggttctcatatagtgt 501
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 708 cttcatgttacatctctcaaagaacaagaatttaccctctgacaggttctcatatagtgt 649
Query: 502 cttacgcagcacaattaattaatcagcaaatgatcagtgagcagatgcacgatgccatga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttacgcagcacaattaattaatcagcaaatgatcagtgagcagatgcacgatgccatga 589
Query: 562 gagattattagtacttactatgcactatttttctttctattactagc 608
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gagattattagtacttactatgcactatttttctttctattactagc 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_n14.g1 MSMg01no489_n14.g1 CHROMAT_FILE:
MSMg01no489_n14.g1 PHD_FILE: MSMg01no489_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:14 2005
(420 letters)
>mm_chr6_49914127_49914946
Length = 820
Score = 729 bits (377), Expect = 0.0
Identities = 411/425 (96%), Gaps = 5/425 (1%)
Strand = Plus / Plus
Query: 1 ggatgtgaagaagaggtaacccttgctttgctgtggtcaccaggctctaaggttggccct 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatgcgaagaagaggtaacccttggtttgctgtggtcaccaggctctaaggttggccct 260
Query: 61 gttgatacaaaattttatacagcagcctggctgggtcaaaatactcacatacggggctgg 120
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 261 gttgacacaaaattttatacagcagcctggctgggtcaaaatactcagatatggggctgg 320
Query: 121 cgagatggctcagcgggtaagagcactgactgctcttccgaaggtcctgcattcaaatcc 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 321 cgagatggctcagcgggtaagagcactgactgctcttccaaaggtcctgcattcaaattc 380
Query: 181 cagcaaccacatggtagctcacaaacacccataatgagatctaatgccctcctctgatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaaccacatggtagctcacaaacacccataatgagatctaatgccctcctctgatgt 440
Query: 241 gtctgaagacaatggggctgaccagagcaagtggggccaaccagagaaagcagaggtcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctgaagacaatggggctgaccagagcaagtggggccaaccagagaaagcagaggtcct 500
Query: 301 aaaatcaattcccaacaaccacaagaagactcacaaccatctgtacagctacagtatacc 360
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 501 aaaatcaattcccaacaaccacaagaaggctcacaaccacctgtacagctacagtatacc 560
Query: 361 gatgtacaaaaaaaa-----tactcaaatattttagtaaatacaagagtggacattttta 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtacaaaaaaaaaaaaatactcaaatattttagtaaatacaagagtggacattttta 620
Query: 416 tgggc 420
|||||
Sbjct: 621 tgggc 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
