Query= MSMg01no489_n17.b1 MSMg01no489_n17.b1 CHROMAT_FILE:
MSMg01no489_n17.b1 PHD_FILE: MSMg01no489_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:15 2005
(558 letters)
>mm_chr6_109732110_109733072
Length = 963
Score = 880 bits (455), Expect = 0.0
Identities = 530/557 (95%), Gaps = 5/557 (0%)
Strand = Plus / Plus
Query: 7 attctttaagt-tatacttagtaaatgtcttgcataagtatacatccatactacttgcag 65
||||||||| | |||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct: 207 attctttaaatatatacttagtaaatgtcttgtacaagtatccatccatactacttgcag 266
Query: 66 agaactactctgtacctgagagtcaactgttagagtgacattcttaaaagctcactgtag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaactactctgtacctgagagtcaactgttagagtgacattcttaaaagctcactgtag 326
Query: 126 atctccctacaaatgttttccaagtgactgaaggaaatgtctac----ttctattttaaa 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 327 atctccctacaaatgttttccaagtgactgaaggaaatgtctacttctttctatttcaaa 386
Query: 182 taaaatcttttcttcattcattggacttaaacaaatgaaacaaatatctaaccatctgtt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taaaatcttttcttcattcattggacttaaacaaatgaaacaaatatctaaccatctgtt 446
Query: 242 gtttaagttattgacatacatttctactcctaaactctgctgaattcaatgctagaggca 301
|||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||
Sbjct: 447 gtttaagttattgacatagatttctactcctgaactctgctgaattcagtgcaagaggca 506
Query: 302 ttggaaatttcacatttattccatccttttagggctgtatggcttaaaagctagacgttc 361
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 ttggaagttccacatttattccatccttttagggctgtatggcttaaaagatagacgttc 566
Query: 362 actctacatacccttagtatcctctgctctgtccacagaccatgtgcaacttctctttta 421
|||||||||||||||||||||||||| ||||||||||||||||| || | || |||||||
Sbjct: 567 actctacatacccttagtatcctctgttctgtccacagaccatgggcgagttatctttta 626
Query: 422 ttgacatgttcacttttctttacattgtgtagtaggataccctgtggtcctcccttctct 481
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgccatgttcacttttctttacattgtgtagtaggataccctgtggtcctcccttctct 686
Query: 482 cctttcctccttgccctcctttcttcctaaaccttgaggttatccatggtgtcttgactc 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 687 ccttttctccttgccctcctttcttcctaaaccttgaggttatccatggtgtcttgaatc 746
Query: 542 atactgataattgcacc 558
|| |||||||| |||||
Sbjct: 747 atgctgataatagcacc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 963
Length adjustment: 10
Effective length of query: 548
Effective length of database: 953
Effective search space: 522244
Effective search space used: 522244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_n17.g1 MSMg01no489_n17.g1 CHROMAT_FILE:
MSMg01no489_n17.g1 PHD_FILE: MSMg01no489_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:15 2005
(564 letters)
>mm_chr6_109906889_109907852
Length = 964
Score = 911 bits (471), Expect = 0.0
Identities = 488/499 (97%), Gaps = 9/499 (1%)
Strand = Plus / Minus
Query: 75 tacaggcacttataatgaaacaatactgaaagagagcacatggattcatacaccagacta 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 tacaggcacttataatgaaacaatactgaaagagagcacatggattcatacaccagacta 905
Query: 135 aagcggggacagggtttgagtatatgggctatgggaatgccaaggttccaggaggcatag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aagcggggacagggtttgagtatatgggctatgggaatgccaaggttccaggaggcatag 845
Query: 195 tttccttgaaactcctcacctcatgactgccttcaggcctttc---------ggcagact 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 844 tttccttgaaactcctcacctcatgactgccttcaggcctttcggcttgtcaggcagact 785
Query: 246 gcactggagtggatgtagcaattgtcaactaaatattaaacacctccatctcataatgga 305
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 784 gcactggagcggatgtagcaattgtcaactaaatattaaacagctccatctcataatgga 725
Query: 306 ctctcttaagactccttaagtagtgggtctgagtttataaaaataagccagactctgaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctctcttaagactccttaagtagtgggtctgagtttataaaaataagccagactctgaat 665
Query: 366 gccagactcccccagcctgttttagttgtcctgttcttgatcctgcccatcaatataggt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gccagactcccccagcctgttttagttgtcctgttcttgatcctgcccatcaatataggt 605
Query: 426 aaatgggatccttggtgtttggggtctattatgaatgcttttgcaaagttcccaagagaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatgggatccttggtgtttggggtctattatgaatgcttttgcaaagttcccaagagaa 545
Query: 486 aaatgagattggaagtagagcttgtgagatcttgtagctcagcccagaggaaacatttgt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaatgagattggaagtagagcttgtgagatcttgtagctcagcccagaggaaacatttgt 485
Query: 546 aggagtttctgctggcata 564
|||||||||||||||||||
Sbjct: 484 aggagtttctgctggcata 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
