This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-490F11
Chromosome
6 (Build37)
Map Location
77,263,168 - 77,263,823
singlet/doublet
singlet
Overlap gene
Ctnna2
Upstream gene
LOC668153
,
EG668155
,
LOC100042956
,
Lrrtm1
Downstream gene
LOC668169
,
EG434050
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC668153
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668153
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins
pseudo
: _no_value
name
EG668155
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668155
MGI:3644000
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 181 ESTs, 3 Proteins
name
LOC100042956
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100042956
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Ctnna2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12386
MGI:88275
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Lrrtm1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74342
MGI:2389173
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668169
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668169
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
EG434050
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:434050
MGI:3644832
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 271 ESTs, 59 Proteins
name
EG668155
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94377518
GeneID:668155
MGI:3644000
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 181 ESTs, 3 Proteins
product
: predicted gene, EG668155
transcript_id
: XM_994639.1
name
Ctnna2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6753295
GeneID:12386
MGI:88275
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catenin (cadherin associated protein), alpha 2
transcript_id
: NM_009819.1
name
Ctnna2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21918868
GeneID:12386
MGI:88275
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catenin (cadherin associated protein), alpha 2
transcript_id
: NM_145732.1
name
Lrrtm1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:131888340
GeneID:74342
MGI:2389173
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat transmembrane neuronal 1
transcript_id
: NM_028880.3
name
EG434050
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94377520
GeneID:434050
MGI:3644832
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 271 ESTs, 59 Proteins
product
: predicted gene, EG434050
transcript_id
: XM_485792.4
name
EG668155
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94377519
GeneID:668155
MGI:3644000
definition
codon_start
: 1
product
: similar to Rnf26 protein
protein_id
: XP_999733.1
name
Ctnna2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21918869
GeneID:12386
MGI:88275
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005912 - adherens junction [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0045296 - cadherin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO_process
: GO:0048854 - brain morphogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 1 is encoded by transcript variant 1; cerebellar deficient folia; alpha N-catenin; alpha(N)-catenin; cadherin associated protein; catenin alpha 2
product
: catenin (cadherin associated protein), alpha 2 isoform 1
protein_id
: NP_663785.1
name
Ctnna2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753296
CCDS:CCDS20250.1
GeneID:12386
MGI:88275
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005912 - adherens junction [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0045296 - cadherin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO_process
: GO:0048854 - brain morphogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 2 is encoded by transcript variant 2; cerebellar deficient folia; alpha N-catenin; alpha(N)-catenin; cadherin associated protein; catenin alpha 2
product
: catenin (cadherin associated protein), alpha 2 isoform 2
protein_id
: NP_033949.1
name
Lrrtm1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27753993
GeneID:74342
MGI:2389173
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: leucine-rich repeat transmembrane neuronal 1
protein_id
: NP_083156.2
name
EG434050
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51712358
GeneID:434050
MGI:3644832
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_485792.1
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 6
pseudo
: _no_value
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 5
pseudo
: _no_value
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 4
pseudo
: _no_value
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 3
pseudo
: _no_value
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 2
pseudo
: _no_value
name
LOC100042956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100042956
definition
number
: 1
pseudo
: _no_value
name
LOC668169
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668169
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:130811
definition
standard_name
: D6Mit262
name
(CDS detail)
type
STS
link
xref
UniSTS:186356
definition
standard_name
: G54343
name
(CDS detail)
type
STS
link
xref
UniSTS:186351
definition
standard_name
: G54336
name
(CDS detail)
type
STS
link
xref
UniSTS:130771
definition
standard_name
: D6Mit225
name
(CDS detail)
type
STS
link
xref
UniSTS:186357
definition
standard_name
: G54340
name
(CDS detail)
type
STS
link
xref
UniSTS:186348
definition
standard_name
: G54326
name
(CDS detail)
type
STS
link
xref
UniSTS:186352
definition
standard_name
: G54344
name
(CDS detail)
type
STS
link
xref
UniSTS:130751
definition
standard_name
: D6Mit208
name
(CDS detail)
type
STS
link
xref
UniSTS:130910
definition
standard_name
: D6Mit359
name
(CDS detail)
type
STS
link
xref
UniSTS:186350
definition
standard_name
: G54335
name
(CDS detail)
type
STS
link
xref
UniSTS:186364
definition
standard_name
: G54331
name
(CDS detail)
type
STS
link
xref
UniSTS:186361
definition
standard_name
: G54329
name
(CDS detail)
type
STS
link
xref
UniSTS:186358
definition
standard_name
: G54341
name
(CDS detail)
type
STS
link
xref
UniSTS:186362
definition
standard_name
: G54330
name
(CDS detail)
type
STS
link
xref
UniSTS:186354
definition
standard_name
: G54338
name
(CDS detail)
type
STS
link
xref
UniSTS:186353
definition
standard_name
: G54337
name
(CDS detail)
type
STS
link
xref
UniSTS:186363
definition
standard_name
: G54342
name
(CDS detail)
type
STS
link
xref
UniSTS:186349
definition
standard_name
: G54334
name
(CDS detail)
type
STS
link
xref
UniSTS:125564
definition
standard_name
: Results_ER_8_28_95_1___175.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:186355
definition
standard_name
: G54339
name
(CDS detail)
type
STS
link
xref
UniSTS:130914
definition
standard_name
: D6Mit361
name
(CDS detail)
type
STS
link
xref
UniSTS:122050
definition
standard_name
: d4rat97
name
(CDS detail)
type
STS
link
xref
UniSTS:165472
definition
standard_name
: AW125451
name
(CDS detail)
type
STS
link
xref
UniSTS:235472
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:130731
definition
standard_name
: D6Mit19
name
(CDS detail)
type
STS
link
xref
UniSTS:186359
definition
standard_name
: G54327
name
(CDS detail)
type
STS
link
xref
UniSTS:130795
definition
standard_name
: D6Mit246
name
(CDS detail)
type
STS
link
xref
UniSTS:186360
definition
standard_name
: G54328
name
(CDS detail)
type
STS
link
xref
UniSTS:125960
definition
standard_name
: mHAa23g11.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:125562
definition
standard_name
: Results_ER_8_28_95_1___172.seq
name
LOC668153
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149255219
GeneID:668153
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins
product
: similar to TUBB protein
pseudo
: _no_value
transcript_id
: XR_034084.1
clone name
MSMg01-471K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059L21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-265N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-060B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517N24
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-149P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338I06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540K15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-166O04
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-150A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-291B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068N07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-099C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-212G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455N23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-085N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-054C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291N19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-360G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336I16
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