Query= MSMg01no490_l03.b1 MSMg01no490_l03.b1 CHROMAT_FILE:
MSMg01no490_l03.b1 PHD_FILE: MSMg01no490_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:21 2005
(657 letters)
>mm_chr6_3379491_3380547
Length = 1057
Score = 758 bits (392), Expect = 0.0
Identities = 467/496 (94%), Gaps = 9/496 (1%)
Strand = Plus / Minus
Query: 1 gtttatttaataatgataaattcctaaggcttattggttctaatgacacaattttgtcat 60
||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||
Sbjct: 488 gtttatttaataatgatgaattcataaggc-------ttctaatgacacaattttggcat 436
Query: 61 gtaaccttaccctagcagcctagccaaggtagattcaggttcttaaaaacaaatattaat 120
|||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||
Sbjct: 435 ataaccttaccctggcagcctagccaaggtggatgcaggttcttaaaaacaaatatcaat 376
Query: 121 tctcatggaacagagcatacaataactatttctatatacatatatgcagtttaaagagtg 180
||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 tctcatgaaacataccatacaataactatttctatatacatatatgcattttaaagagtg 316
Query: 181 aatacacacattaaagaggttgcagcagagttctaagagtttcaccagtgatctgagaga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 315 aatacacacattaaagaggttgcagcagagttctaatagtttcaccagtgatctgagaga 256
Query: 241 tagtctttattggtaaactgtagcatgtagttttatgatctagtcaccttcagctctgag 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 255 tagtctttattggtaaactgtagcatgtagttttatgatctagttacctttagctctgag 196
Query: 301 aggtgactgtgctaccagcccccacctggcttcacttgaatccttggactaaagacatag 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 195 aggtgactgtgctaccagcccccacctggcttcacttgaatccttggaataaagacatag 136
Query: 361 acccaccgttttccaattacacctggcctggcacaatagctgggcattattatttcctgc 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 acccaccgtttttcaattacacctggcctggcacaatagctgggcattattatttcctgc 76
Query: 421 ttcgaaaagagtg-cctttaccaatttcttatctccatcgctccacttgccttaaacttt 479
|| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 tttgaaaagagtgtcctt-accaatttcttatctccatctctccacttgccttaaacttt 17
Query: 480 agttgttaaactcccc 495
|||| |||||||||||
Sbjct: 16 agtttttaaactcccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_l03.g1 MSMg01no490_l03.g1 CHROMAT_FILE:
MSMg01no490_l03.g1 PHD_FILE: MSMg01no490_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:21 2005
(629 letters)
>mm_chr15_3020842_3021869
Length = 1028
Score = 884 bits (457), Expect = 0.0
Identities = 590/651 (90%), Gaps = 36/651 (5%)
Strand = Plus / Plus
Query: 1 cacatccctaagccccttaccccataaaaatccctagctttcgagcctcatggccgaaat 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 cacacccctaagccccttaccccataaaaatccctagctttcgagcctcgtggccgacat 260
Query: 61 ctgttatctcctgtgtgggatgcatgtcagtccagagctctgtcattaaacgtcctcatg 120
|||||||| ||||||||||||||||||||| || || ||| |||||||||||||||||||
Sbjct: 261 ctgttatcacctgtgtgggatgcatgtcagaccggatctccgtcattaaacgtcctcatg 320
Query: 121 taattacatcaagagatggtcctttgtgattttttggggtgcacaccgaatcagaaattg 180
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 taattacatcaagaaatggtcctttgtgatttttttgggtgcacaccgaatcagaaattg 380
Query: 181 ggtgggggtttccccactaggtctaacaccaacagggaaatgaaacatgcagtgtaggat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ggtgggggtttccccactaggtctaacaccaacagggaaatgaaacatgcagtgtagggt 440
Query: 241 taaagttatcctggccaaaaaccattctgctcatgttcaagaacatttagaaaaccgctt 300
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -aaagtcaccctggccaaaaaccattctgctcatgttcaagaacatttagaaaaccgctt 499
Query: 301 tgatagtataggacagtacattcattcacaatgccccataaatgagtctgtcttcaggca 360
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taatagtatagggcagtacattcattcacaatgccccataaatgagtctgtcttcaggca 559
Query: 361 agaacgaaaatactgttatccttgtgaactgaagcagaatca-aaggggaaagagaagaa 419
|||| ||||||||||||||||||||| ||||| |||||| || ||||| |||||||||||
Sbjct: 560 agaatgaaaatactgttatccttgtggactgaggcagaaccacaagggaaaagagaagaa 619
Query: 420 ggtagagaaaggagaaaaggaca-tggggtaaaaatcttgaaa-----gca--------t 465
|||||||| |||||||||||||| |||| || |||||||||| ||| |
Sbjct: 620 ggtagagagaggagaaaaggacactggg-taggaatcttgaaaaaacggcaatgagggct 678
Query: 466 ggcca--tg-ag---g-gcagcctagatgaatatgacaagccatattgtgggattattgg 518
||||| || || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggccagttggagtaagagcagcctagatgaatatgacaagccatattgtgggattattgg 738
Query: 519 cagagaaatggacattattatatatattattatatatctgcccagctctagtgtggatta 578
||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 739 cagagaagtggacattattatatat------------ctgcccagctctagtgtggatta 786
Query: 579 aaccttcttatgaatataaaagttttgtcttttatctggaaactgaataat 629
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aacctgcttatgaatataaaagttttgtcttttatctggaaactgaataat 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
