BAC Information

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BAC

Clone NameMSMg01-491H10
Chromosome6 (Build37)
Map Location 56,704,043 - 56,704,548
singlet/doubletsinglet
Overlap gene5830411G16Rik
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, LOC100042288
Downstream geneKbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491H10.T7 (MSMg01no491_h10.b1)MSMg01-491H10.TJ (MSMg01no491_h10.g1)
ACCAG569452AG569453
length747765
length of high quality
(start - end)
542 (55 - 596)615 (64 - 678)
definitionCHROMAT_FILE: MSMg01no491_h10.b1 PHD_FILE: MSMg01no491_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:23 2005CHROMAT_FILE: MSMg01no491_h10.g1 PHD_FILE: MSMg01no491_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTAAACGACTCACTATTTTCAGAGATCCGCGGAATCATGTGGAAAAC
CAACTTATTTTGTACAATTAACTCTCTAGTACTTGGCAACAGAATTGTCA
AAAGAATGTATGTATGTAATAGCACAAATTTTATTTAAATCATATAAAGA
ATCTTGCTTTGCTACTTTAACCATTAAAGTTTAAAGAATCTGTGTTTTGG
AAACAAAAAAACTGGGGCAACAGAGGATGATTCTTGATACCCAGTGGTAA
ATCCAACTCCAGGGGATTCCATGACATCTTCTCACCTCTGTGGACACCGG
AAATGCTTCTCATGAATACACTCTGGCACAATACTTACACATATAAATCT
AGCTTTTTAAAGAAGAAAGAAAACATACTTTTGAAAATATATAAGATGTC
ATTGTGACTGTAGGTTTTTCAGCCTATTGATTATTCTGTTATCAGAACTG
ATTTGTACCAAAGGAGTAATTGTGGGATAGGCATTCACCACAAACTTCTG
AGCAGTCAGGAGAACTGGGTCATACATCCATAACAGGACTGAGGTGGATG
AGATGATGAAGTCCACCCAGTACATGACCACAAAGAAAACCACCAGCAGC
ACGATGGTCTGGGTAGCCCTTTTCTCAGGGGAGGCTCTCAGGTGGCTGAT
GCTATGAAGATGCTTGCATTGCCTCTGATGCCTGAACAAGATATCACCAT
GTATACACTTGTAGTCAGCATGACTCCTACAAGAAACACGTCTCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATTACAATAAAGTTATAGAGATTTCTGGATCACATAACAA
TACAAGGGGGCTTTTAAAGTTTTCAGTTTTAAAATAAAAAGAGGAATTTA
CGTTTTCTAAGTAGACAAAAAAAGAGACACTACAGATAACCAGGATTAGA
CTACAGATAGTAAAATCAGAATAGCTTTAGATCTGTGAAGAACTTAAAAC
CTGGTGCAGGGTTTCTAATTTAACCAACATCTATGTTGGCTTGGCTCTTG
AGTTCTTTTCTTCTCTTCTTCCTCTCTTTTCTCTCTCACTCTCTGTCTTC
CTTTCTTTTATTCAACCCCCTACTTTTGTTTGTCAAAACAGTGTCTAGCT
TTGTAGTCTAGATTAACCTCAAACTCCAGATTCTCCTGATTCAACATCCC
AAGTGCTGAGATTACAAACTTCTCATTGAAATTCTATTAGATATTTAAGG
AAGAAATAACATAAATTGAATACAAACCTTTCATAAAGTAGTGAATAAGA
TAATACTTTCCAACTCACTTTATGAGGCCAGTATTAACCAGATACCCAAA
GCTAGGTAAATCATTGCATGAACATATATTCTGTGCCTAGCATTTTTTCA
CTCACAATTTTTTGAGGATTATTCTATGGTGTGTCGGAATAAATATCTTA
TTTCTTCCCACCCCCACCCCTTTTGTTTGTTTGTTGTTGAAGCCCCGCTA
AACTGGGACTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_h10.g1 MSMg01no491_h10.g1 CHROMAT_FILE:
MSMg01no491_h10.g1 PHD_FILE: MSMg01no491_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:23 2005
         (615 letters)



>mm_chr6_56703734_56704748
          Length = 1015

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 110 agagacactacagataaccaggattagactacagatagtaaaatcagaatagctttagat 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agagacactacagataaccaggattagactacagatagtaaaatcagaatagctttagat 369

                                                                       
Query: 170 ctgtgaagaacttaaaacctggtgcagggtttctaatttaaccaacatctatgttggctt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgtgaagaacttaaaacctggtgcagggtttctaatttaaccaacatctatgttggctt 429

                                                                       
Query: 230 ggctcttgagttcttttcttctcttcttcctctcttttctctctcactctctgtcttcct 289
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggctcttgagttcttttctcctcttcttcctctcttttctctctcactctctgtcttcct 489

                                                                       
Query: 290 ttcttttattcaaccccctacttttgtttgtcaaaacagtgtctagctttgtagtctaga 349
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 490 ttcttttattcaaccccctacttttgtttgtcaagacagtgtctagctttgtagtctaga 549

                                                                       
Query: 350 ttaacctcaaactccagattctcctgattcaacatcccaagtgctgagattacaaacttc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaacctcaaactccagattctcctgattcaacatcccaagtgctgagattacaaacttc 609

                                                                       
Query: 410 tcattgaaattctattagatatttaaggaagaaataacataaattgaatacaaacctttc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tcattgaaattctattagatatttaaggaagaaataacataaattgaatacaaacctttc 669

                                                                       
Query: 470 ataaagtagtgaataagataatactttccaactcactttatgaggccagtattaaccaga 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataaagtagtgaataagataatactttccaactcactttatgaggccagtattaaccaga 729

                                                                       
Query: 530 tacccaaagctaggtaaatcattgcatgaacatatattctgtgcctagcattttttcact 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tacccaaagctaggtaaatcattgcatgaacatatattctgtgcctagcattttttcact 789

                                     
Query: 590 cacaattttttgaggattattctatg 615
           || |||||||||||||||||||||||
Sbjct: 790 caaaattttttgaggattattctatg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)