BAC Information

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BAC

Clone NameMSMg01-491H12
Chromosome6 (Build37)
Map Location 68,824,474 - 68,825,122
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88
Downstream geneIgkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491H12.T7 (MSMg01no491_h12.b1)MSMg01-491H12.TJ (MSMg01no491_h12.g1)
ACCAG569456AG569457
length787732
length of high quality
(start - end)		---649 (67 - 715)
definitionCHROMAT_FILE: MSMg01no491_h12.b1 PHD_FILE: MSMg01no491_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:23 2005CHROMAT_FILE: MSMg01no491_h12.g1 PHD_FILE: MSMg01no491_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTGTTGTTTTTAATTTACTCTTTATATTTCTCAGATCTTTCTTATTTC
TTTGTTTATTTCTGTACCCCACTTTTAATATTGTTATATGATTGTCTGGA
GTAAAATTTCTTGAGTTCTTTGTATGTATTGTATATTAAAGCTACTTTAC
ATTTGTGATTGATGAATTTATTTTCCCAAACTGTTGTTTGCACCTCTGTC
CAATTGACAGTGTCCTTTGCCTTGCATAAGTTTTGCCATTTTATGAGGTT
CCTTTTGTCAATTTTTGATCATACATCTACAAATTATTGGTGTTCTGTTC
AAGAAATTTCCCCCTGTGCCAATGTATTCAAGGGTCTTCCCCACTGACTC
TCCTATAAATTTCAATGAATCTTGTCTTACGCGGAGCTCCTTGATCCCTT
TATATCTTAACCTTTTATCATGATATTTTATATGAATATATAATCTTTAC
TTCTATATTCTTACTGCCAACTGAAACCATTTCCATTCTGTTGATTAGCC
CATATCTTTTTTCCACATGTATGGCGCTATTCACCGCATGCAACACATCA
TATTGTATCCATATTATCGTCCTTGTTTCTATTATCGAGGCTTTCTATAC
ACCATTCTCACTGTTCCTTCCCTTCTTCGTATTTTTTTTTTTTATACTTA
TATTTTTATTTTATCACTCGGCTACTTCTGCGTTACTTCCTTAAACAGTA
AGATCACGTCTCTTGTGTTAACCACCCCCGCAAATTCTCCCTCACAGATG
GCTGCTCCGCACCTTGCGTCTTTCTATCTTATCATTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGATTTGATTTTTGTTTTGATTGAAGGCTTGG
TTCAGTGTACATGTTCTTTTCCCATGATGTATGTGATTGCAATAATATGA
ATGGTAAGACACTGGGATATTATAGAAAACTTATTTATTATCTTATGTAA
TGCATAAGTATTAAAGGTAATGTAAATTGAAAATAGAATTGTATTCAATT
CACTAATATTCACAAATGTGAAGGTTAAAAAAATAAAATTGTATCAATAT
AGAAAAAATACCTAACCATTTTTTAATAGAAATATATGAAGGAAAATAAT
CAAACCAACTTTAAAATAGTAGTGTAAAAATGTTCATACCCATCAATAAC
TGTGAATTAAACTGGAATAAAACTCTCATTCAAAAAATAGTTAAATATAT
GCAAATAGGGAAATTAACTCTTGGCTAGAGAATGAGTTTTCTTCATGAAT
AAGGACATAGTCTAGAACTTCAGGAGTCAGTGAACATCCTTTATGAAAGT
AAAAATCAAAAGGGAGTAGGATACTCAGTATTTCTAGTAATAAAACAGAG
TTTACATCAAAACCATAAAATGCGACACAGTAACTGTATAGTAAAGGAGA
CACTTTAACAAAGGACAATGTCTCCATTTTCTGTCTGCATTAGAGGATAA
TTTTGAGTGAGGAAGGAAGACAAAGCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_h12.g1 MSMg01no491_h12.g1 CHROMAT_FILE:
MSMg01no491_h12.g1 PHD_FILE: MSMg01no491_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:24 2005
         (649 letters)



>mm_chr6_68824274_68825322
          Length = 1049

 Score = 1123 bits (581), Expect = 0.0
 Identities = 632/653 (96%), Gaps = 8/653 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatttgatttttgttttgattgaaggcttggttcagtgtacatgttcttttcccatg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatttgacttttgttttgattgaaggcttggttcagtgtacatgttcttttcccatg 260

                                                                       
Query: 61  atgtatgtgattgcaataatatgaatggtaagacactgggatattatagaaaacttattt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 atgtatgtgattgcaataatatgaatggtaagacactggaatattatagaaaacttattt 320

                                                                       
Query: 121 attatcttatgtaatgcataagtattaaaggtaatgtaaattgaaaatagaattgtattc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 attatcttatgtaatgcataagtatgaaaggtaatgtaaattgaaaatagaattgtattc 380

                                                                       
Query: 181 aattcactaatattcacaaatgtgaaggttaaaaaaataaaattgtatcaatatagaaaa 240
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aattcactaatattcacaaaagtgaaggttaaaaaaataaaattgtatcaatatggaaaa 440

                                                                       
Query: 241 aatacctaacca----ttttttaatagaaatatatgaaggaaaataatcaaaccaacttt 296
            ||||||| |||    ||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacctagccaaaactt----aatagaaatatatgaaggaaaataatcaaaccaacttt 496

                                                                       
Query: 297 aaaatagtagtgtaaaaatgttcatacccatcaataactgtgaattaaactggaataaaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 aaaatagtagtgtaaaaatgttcatacccatcaataactgtgaattaaattggaataaaa 556

                                                                       
Query: 357 ctctcattcaaaaaatagttaaatatatgcaaatagggaaattaactcttggctagagaa 416
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 ctctcatccaaaaaatagttaaatatatgcaaatagggaaattaactcttggctagaaaa 616

                                                                       
Query: 417 tgagttttcttcatgaataaggacatagtctagaacttcaggagtcagtgaacatccttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagttttcttcatgaataaggacatagtctagaacttcaggagtcagtgaacatccttt 676

                                                                       
Query: 477 atgaaagtaaaaatcaaaagggagtaggatactcagtatttctagtaataaaacagagtt 536
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 677 atgaaagtaaaaatcaaaagggagtaggatgctcagtatttctagtaataaaacagagtt 736

                                                                       
Query: 537 tacatcaaaaccataaaatgcgacacagtaactgtatagtaaaggagacactttaacaaa 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tacatcaaaaccataaaatgcgacacagtaactgtatagtaaaggagacactttaacaaa 796

                                                                
Query: 597 ggacaatgtctccattttctgtctgcattagaggataattttgagtgaggaag 649
           |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 797 ggacaatgtctccactttctgtctgcattagaggatagttttgagtgaggaag 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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