BAC Information

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BAC

Clone NameMSMg01-491P04
Chromosome6 (Build37)
Map Location 42,423,913 - 42,424,489
singlet/doubletsinglet
Overlap genenone
Upstream genePrss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457
Downstream geneOlfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491P04.T7 (MSMg01no491_p04.b1)MSMg01-491P04.TJ (MSMg01no491_p04.g1)
ACCAG569823AG569824
length999751
length of high quality
(start - end)		---581 (65 - 645)
definitionCHROMAT_FILE: MSMg01no491_p04.b1 PHD_FILE: MSMg01no491_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:01 2005CHROMAT_FILE: MSMg01no491_p04.g1 PHD_FILE: MSMg01no491_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGCTTATACGACTCACTATATTTTCAATAGACTCCGCGGAATTCTTNTG
ATTATTTCCCGTAACAAACTGAAAANNGGGGCACAACTAAGATTTCTCGG
AGTGTCAGCATTCTATGATGCTCTTTCGTATATATATGATATATCTAGTC
ACCGCTGATCAGACTTCAGGCATTATGCAAACAATTCTTGTCCCATATCT
CGAATTGTGAGTCTTATTCGTACTTATATTATCAGTTATCTATTTGACCA
CTATATGATATCTTTTGCTATCTTTATTGTAGGCCCTCATTTTGGACGAT
TTCTTTGATCTTTACACGCACAGTGGCATGTGTCTTGTTCTGTATTAATG
AATTTTATTCCCCCTGTATTTTCTTTTTGTTCTCAAGCCTTCTTCACCAC
GTTTACTTACTCGAAAAAATAATCATGTTGACCCGTGTGATACTATCGTG
GTACGTTCTTATTGTTCTACCTGATTAACTTGTAGCTTTTGTTACTTATG
ATGATTTAGTAATTGCTATCAGTTTTTCTCATCTCTATCTCCCTTTGTAT
TATCTCTTCTCTCTTTGTATTCGTCATTGCTCGTTTTGGATTTAACATTG
CCTTTTCTTTTTTTCATTACCTTAATTTAAAGTGTTATTTATATGTTTCT
TTAGGGTTGCAGTTATATAGGGTATGATCTATTAGTTTCTTGGTACGTTA
TCTGACTTTTCTGGTATGTCTATCCAGCTCTAAACTACCTTACCTCCATT
CTACTCATGTGTCTCGGTTTGTATCTATGGTATAAATTGTTCCTTGCTTC
TTCCTCCCGATTGGTTTATGTCTCAGTTTTCTGTGTTGTTAGTTTATTTT
GTCTGCATCGCTCCTCTTCTATTGTGTAGCGTTCTCCCTAGTGTGACCAT
CTCTTACCTCTATTTCGACACCAAGCTGCTCTCTCCTCTTATTCCTTCTC
CTTCTCCTCTTCACTATTTTCTACGATTAAGAGAAATTAAGAGACTTGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCTGATCTGTACCCTGTGTGAAGGTTCTAGGTTTCATCCAGA
GAGCAATGAGCCCTGCTAGAAATGGAAGGAATTACTTCCCCCTCTTATGT
TCTGCCTAAAGAATGCAAGCGGTAAGGTGAAGTCACCCGCGCAGGTCTCA
AATCCATCTGAGAACCAGTCTGAAGCCTGTCCTCATGATCTTATTTGTTA
TGAAGCTTATTATTGAGAGGCACAGGGGGTTGCTGACAGATAAAGTTCAA
GGGGGAGGATGTTTGTGGACCATAGAAGATGGGTTCAGACTGTCATCTTG
CTTTCAAGAGCAGGGGATGCTCTCATAGTGAGTCAGGGAATCTCAGCTCC
AGCTTTCCTATTTGAGCAAGAAACCTGCTCTGTTACAAGCTTCTTGGTGT
TTGTATTCCTATTTTCCTCATTGGAGTCATGTGAGCAACAATAAACAAAT
GTAGCTTTCTGCAAAGTCTGTCAAATAAGGTCAGATGAACCAGTGAACAC
AAATATATTTTGGAAAACTATTCTGTAAATCCTTACTGGTTCCTGCACTC
AAGAGAGTTCATATCACTTAGGGAACTTTACTCAGTAGTATGATGACAAG
TGACAGTGGGAACTACAGAAGATCAGAATGTTAATAGAATGTGGGAGGAG
CAACAGATCATGTATAATATCCCCCAATGATTAGACTTAGATGGGACCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_p04.g1 MSMg01no491_p04.g1 CHROMAT_FILE:
MSMg01no491_p04.g1 PHD_FILE: MSMg01no491_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:01 2005
         (581 letters)



>mm_chr6_42423713_42424693
          Length = 981

 Score = 1038 bits (537), Expect = 0.0
 Identities = 567/577 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaccctgtgtgaaggttctaggtttcatccagagagcaatgagccctgctagaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaccctgtgtgaaggttctaggtttcatccagagagcaatgagccctgctagaaatg 260

                                                                       
Query: 61  gaaggaattacttccccctcttatgttctgcctaaagaatgcaagcggtaaggtgaagtc 120
           |||||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 261 gaaggaattacttctccctcttattttctacctaaagaatgcaaggggtaaggtgaagtc 320

                                                                       
Query: 121 acccgcgcaggtctcaaatccatctgagaaccagtctgaagcctgtcctcatgatcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccgcgcaggtctcaaatccatctgagaaccagtctgaagcctgtcctcatgatcttat 380

                                                                       
Query: 181 ttgttatgaagcttattattgagaggcacagggggttgctgacagataaagttcaagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttatgaagcttattattgagaggcacagggggttgctgacagataaagttcaagggg 440

                                                                       
Query: 241 gaggatgtttgtggaccatagaagatgggttcagactgtcatcttgctttcaagagcagg 300
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggatgcttgtggaccatggaagatgggttcagactgtcatcttgctttcaagagcagg 500

                                                                       
Query: 301 ggatgctctcatagtgagtcagggaatctcagctccagctttcctatttgagcaagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgctctcatagtgagtcagggaatctcagctccagctttcctatttgagcaagaaac 560

                                                                       
Query: 361 ctgctctgttacaagcttcttggtgtttgtattcctattttcctcattggagtcatgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctctgttacaagcttcttggtgtttgtattcctattttcctcattggagtcatgtga 620

                                                                       
Query: 421 gcaacaataaacaaatgtagctttctgcaaagtctgtcaaataaggtcagatgaaccagt 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 gcaacaataaacaaatgtagctttctgcaaagtctgtcaagtaaggtcagatgaaccagt 680

                                                                       
Query: 481 gaacacaaatatattttggaaaactattctgtaaatccttactggttcctgcactcaaga 540
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacacaaatatattttggaaaattattctgtaaatccttactggttcctgcactcaaga 740

                                                
Query: 541 gagttcatatcacttagggaactttactcagtagtat 577
           |||||||||||||||||| ||||||||||||||||||
Sbjct: 741 gagttcatatcacttaggtaactttactcagtagtat 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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