Query= MSMg01no492_d18.b1 MSMg01no492_d18.b1 CHROMAT_FILE:
MSMg01no492_d18.b1 PHD_FILE: MSMg01no492_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:24 2005
(569 letters)
>mm_chr6_49315295_49316262
Length = 968
Score = 804 bits (416), Expect = 0.0
Identities = 464/480 (96%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 90 ggtcagttgtggctgttttccaatagtgtgtttctacttcagggctctgccagctgagcc 149
|||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 968 ggtcagctgtggctgttttccaacagtgtgtttctacttcagggctctgccaactgagcc 909
Query: 150 atgtccccggcctggtcagtgtgggatggttttgagaggtctcacccgctatacgatcct 209
| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 908 gtatccctggcctggtcagggtgggatggttttgagaggtctcacccgctatatgatcct 849
Query: 210 ggctaatttagaactcaccatgcggtcaagtctgttttcacacttgggctcctcctgccc 269
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 848 ggctaatttagaactcaccatgcggtcaagtctgttttcacacttgggcttctcctgcct 789
Query: 270 ctgcttccaaatgcctggataagtaagggatgttcttagtgttaaacttcttaaagttct 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgcttccaaatgcctggataagtaagggatgttcttagtgttaaacttcttaaagttct 729
Query: 330 tattgttattagcccgtcattcaaaatcctttttaaaagtgttttaattagcatacaaag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tattgttattagcccgtcattcaaaatcctttttaaaagtgttttaattagcatacaaag 669
Query: 390 tgttgaatttccataagtctttttcatatgtgagtagtttctgctaactcacccctgccc 449
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgttgaatttccataagtc-tttccatatgtgagtagtttctgctaactcacccctgccc 610
Query: 450 ctgccctcatcccttagttcccagtattaccctcttctgtcaaatcgcatgtgctctact 509
||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 609 ctgccctcaccccttagctcccagtattgccctcttctgtcaaattgcatgtgctctact 550
Query: 510 cttccctccccacactgaggcctctttccctcccctcttgtgggacctttctggcttact 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttccctccccacactgaggcctctttccctcccctcttgtgggacctttctggcttact 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_d18.g1 MSMg01no492_d18.g1 CHROMAT_FILE:
MSMg01no492_d18.g1 PHD_FILE: MSMg01no492_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:24 2005
(392 letters)
>mm_chr6_49151078_49151869
Length = 792
Score = 675 bits (349), Expect = 0.0
Identities = 385/407 (94%), Gaps = 18/407 (4%)
Strand = Plus / Plus
Query: 2 tccacacatttattttaaataaaacagtttttaaacttctgtcatatttcatttgcaata 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 tccacacatttattttaaataaaacagtttttaaacttctgtcatatttcatttgcaaaa 261
Query: 62 aaagcaagtgtctacatttgtgtaaaatgtgctgattttaaaaacgggagggggtacctt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagcaagtgtctacatttgtgtaaaatgtgctgattttaaaaacgggagggggtacctt 321
Query: 122 aaaaaaaatggcccagtaaataagagtgccactctcccatatgacttgagttttctccct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaaaaaatggcccagtaaataagagtgccactctcccatatgacttgagttttctccct 381
Query: 182 agcacccatattaggtggctcacaaccacctgtaactgcagttattggggatctaacacc 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 agcacccatattaggtggctcacaaccacctgtaactgcagttattggggacctaacacc 441
Query: 242 -ttttctggcttttgggggtacctgcaca---------------catatacatgaaataa 285
|||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 442 cttttctggcttttgtgggtacctgcacataagtggcttacacacatatacatgaaataa 501
Query: 286 aacataaacttaaaaaaaaaaataggcacagtggttagaacccttgtactcccccagagg 345
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 502 aacataaacttaaaaaaaaa--taggcacagtggttagaacccttgtactcccctagagg 559
Query: 346 cttcaggttcaagtcccagtacccacatgatgttcatcaccatctgt 392
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcaggttcaagtcccagtacccacatgatgttcatcaccatctgt 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
