BAC Information

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BAC

Clone NameMSMg01-492H05
Chromosome6 (Build37)
Map Location 50,798,264 - 50,798,675
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H05.T7 (MSMg01no492_h05.b1)MSMg01-492H05.TJ (MSMg01no492_h05.g1)
ACCAG570203AG570204
length715736
length of high quality
(start - end)
412 (70 - 481)456 (69 - 524)
definitionCHROMAT_FILE: MSMg01no492_h05.b1 PHD_FILE: MSMg01no492_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:41 2005CHROMAT_FILE: MSMg01no492_h05.g1 PHD_FILE: MSMg01no492_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGATCCGCGGAATTC
ACAAGTCTGCTTGGACTGGCCTCAGAGGTCTGATTGAATGAGGCTACAGT
TTCTCTACCTCTGACGCAAGGGTTCTATTCAGTGAGAGGTATGCTGAGCA
GTCTTAAGAGAATTGGGGGAGAAGAGGGTTTGTTTTTTCTGGTCTTCAGT
GATGCTCCCCAGAGAGAAAGGCCATGTGTCACAGTATGGTTTGTTTTTTC
TGGTCTTCAACAATACTCCCCAGAGAGAAGGGCCCTGTTTCACTAGGCAA
ACCAGCCTTGTTTTTTTTAACGTGTTCAGACTGGAATTTGCCTGGCTCCA
GTGTTCAGTATGATGGGGCATGGCTAAGAGAGCTGTGCTGCTGACCTGGG
GAAAGGCTCACTGGGACAGGGCACTGTCCTCCAAAAACATGTGCTTGGCA
GCCTGGGACTCACTAAGTTCCTGCCTCTGGCCATCTCCATACGACAGGAC
AGTTATGTGGCCATTGGCCTATAACAAGGAGCATATTGCTGTAAGGAGCA
CAGTGGATGATGACTTCATTTCCATGGAACCGGAGCCAATCCTTGTCTCT
GTCACTTAGTGTGTGACTGTATGGAGTTGCTAATCTCTTTCGAGTCTCTT
TCTCGTCTGTGAGACTAGTATGTTGATTACTGCTATCTTCTGGAATTGTC
TTGTAGCGCCATGGC
CATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGCGAAATTCACCGTAGTTTGTTAAACTAGACAGTTGT
AAGATCTGCAAAAGTGTAAAAGAATGCCACTCCCTTCCAAACATTAACCA
TCGTTAACTGTGGCAAAACGCAATTAACATAAAGTTTATTGTCTTCTACT
ACACATTTAGGCTGTGGGATATGAGAAATCACTTTCTAACTGAATGGGAA
ATTTCTTCTTCTCTGGCTAGCTTTCATAATGCCAGATGGTGCTATGCAGG
ATGCTGAGGCATACTTTAAATCAATGATCTTATCCTATCCTGAGTTTCAT
GTGCTCAATTTGAACCCCCCAAGTAAGATTGCCCGTGGGCACAACAGTGG
CACAACTACTGTGGGCTAAGGAACCACTTTCTGATCGGCCTTGAGGGCTG
ATTCTCAGGAAGGGATTGCGTGCCTGGTCTTGTAACTCTGTCAACGGCCC
ATAGATGGGGAGCTCATAAGCCCTAGAGCAGAAGCTGTTATTGTTATCCT
TAAAATAGTCATGCAGTCATATTGCCCTCTAAATATTTGTGTTTATATCC
CTAGGCCTGGCTGCTCTCAATCTTGTCAGAAGAAGTTTCTCTTCCATCTT
TTCCCCAAAAAAGAAAGGGTTTGTTTCTCCTACAGCTTGTAGCTCTTCTC
CACGGGAATCATACGATGAGTTCATGGTGGACTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h05.b1 MSMg01no492_h05.b1 CHROMAT_FILE:
MSMg01no492_h05.b1 PHD_FILE: MSMg01no492_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:41 2005
         (412 letters)



>mm_chr6_50798064_50798875
          Length = 812

 Score =  723 bits (374), Expect = 0.0
 Identities = 402/418 (96%), Gaps = 12/418 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcagaggtctgattgaatgaggctacagtttctctacctctgacgcaagggttctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagaggtctgattgaatgaggctacagtttctctacctctgacgcaagggttctatt 260

                                                                       
Query: 61  cagtgagaggtatgctgagcagtcttaagagaattgggggagaagagggtttgttttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgagaggtatgctgagcagtcttaagagaattgggggagaagagggtttgttttttc 320

                                                                       
Query: 121 tggtcttcagtgatgctccccagagagaaaggccatgtgtcacagtatggtttgtttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcttcagtgatgctccccagagagaaaggccatgtgtcacagtatggtttgtttttt 380

                                                                       
Query: 181 ctggtcttcaacaatactccccagagagaagggccctgtttcactaggcaaaccagcctt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ctggtcttcaacaatactccccagagagaagggccttgtttcactaggcaaaccagcctt 440

                                                                       
Query: 241 gt------tttttttaacgtgttcagactggaatttgcctggctccagtgttcagtatga 294
           ||      |      |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgagaaat------aacgtgtttagactggaatttgcctggctccagtgttcagtatga 494

                                                                       
Query: 295 tggggcatggctaagagagctgtgctgctgacctggggaaaggctcactgggacagggca 354
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 tggggcatggctaagagagctgtgctgctgacctagggaaaggctcactgggacagggca 554

                                                                     
Query: 355 ctgtcctccaaaaacatgtgcttggcagcctgggactcactaagttcctgcctctggc 412
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgtcctccaaaaacgtgtgcttggcagcctgggactcactaagttcctgcctctggc 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)