BAC Information

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BAC

Clone NameMSMg01-492J18
Chromosome6 (Build37)
Map Location 84,102,020 - 84,102,145
singlet/doubletsinglet
Overlap geneDysf
Upstream geneRtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, LOC665114
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J18.T7 (MSMg01no492_j18.b1)MSMg01-492J18.TJ (MSMg01no492_j18.g1)
ACCAG570325AG570326
length922744
length of high quality
(start - end)
---126 (259 - 384)
definitionCHROMAT_FILE: MSMg01no492_j18.b1 PHD_FILE: MSMg01no492_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:53 2005CHROMAT_FILE: MSMg01no492_j18.g1 PHD_FILE: MSMg01no492_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCGGCCGCTAAACAACTCACTATTATTTCCACGNATCCGCGNAAATT
CCAAGCTCTTTCCTTGACTCAAGGACTTTCCTANNGACANTTGAANNCAC
TGNTGGAANGCCTATCCCCAATTTANNCTATANTGTCAAAAATCAATCCC
TTTAAANGGCACTTTACAAACAATATTNNAGGGNANAANCACACAAAATT
CTTTACCCCCCCCAAACTAACCCCCGGAAAAACNGTTTTNTAACCCAAAC
CCTGTCTATTGGAAAAACCCCCCATGTTTTCCCAAAAGGCCTAAAATTTT
CTCCCAAAAAATTTTTTTNCCCTCCNNAACGNNNTTTCNNNNNTTCGTAT
GGCTTGAGACCANATTTCCTTTGTTGGGCCATTAAGCGGCCCACTTTCTG
TGAATATAGTTGACTGTCCGGGGGGGGGGGGGGGGGGGGGCTGGGGAGGG
GGGGGGGGGGGGGGGGGGGGGGGTGCTGGGGGGGNTNNTGNNNTACTTTT
TTCTGCCNNNNNNNNNNNTNNAATGATNNNNTCTNNNNNTGTGGGGGGGG
GAGGGTGGGGGGGGGGGAGGGGGAGGGGGGAGAGGGGGAGCGGGGGGGGG
AGGTGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGCTGNTTNNNNNANNNNNTTNNNN
ANATANAATAGGTGGGGAGGAGGTGGGTGCTGGGGGNNNNNNTNTNTNTN
NNGGGGGGGGGGGGGGAGGCTTGGGGGGAGGGGGGGGGTGTGTCTTNNNN
NTTNTNATNNNNTNTNTTTNNTTTNTTNNTNTATTNTTTANAANANATTA
TATATATNATNNAAATTTTTTTNNTTTTCCTTTTANNATATTTTAATATT
TTTAATTTTTTATTGTTTGTTG
TGAAGTGGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAAATGACTTGGAGGCCATGTTTAGAGCATC
CCTCTTCTCCTCTCAGATGTTACCCAGAAAGAACTTCTACGGTCCCCCTA
TTGTGGTCAAGGTCATTGATAATCGCCAGTTTGGCCGCCGGCCAGTTGTG
GGTCAGTGTACCATTCGCTCCCTGGAAAACTTCCTGTGTGACCCATACTC
AGCAGAGAGTCCATCCCCACAGGGTGGCCCAGGTAAGGAGCCTTTGCTGA
GCTGGCCTTGTCATTTTTCCTTCGGGTTGGCACATCTGGACCAAGTGACC
TCCTACTTGTGGGTGGGAAGCATGGTTCAAAATAGAGGGAAGAAGTAGAG
GGAAGGGAATGGATGGGGAGCATGGGAGATGAGAGAGATAGAATCAAGAA
AGAGAATGTCTGGTGACAGAAACACCTCTGCCAGTGTGAGGTGAGGTGAG
ATTGTGTTGTCTGGTGACAGTCCCCTGGTTGAATCCCTCATATATGCTAC
ACTTGCTTCCCTGCTTATGATGCGAGCATTACTCTGCCCTGGGGTAAAAT
TTGTTTACTTGACATTTTTTGCATATTGATCTCTTTTCATTTCTTGATTT
GCCGTGGTCATAAACTGTTNATGGCCTTTCTTTCCTCTCCTGCCCCATTA
CCCTTGTATATTCCATTCATTCTTCCGTATATCGCCCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j18.g1 MSMg01no492_j18.g1 CHROMAT_FILE:
MSMg01no492_j18.g1 PHD_FILE: MSMg01no492_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:53 2005
         (126 letters)



>mm_chr6_84101820_84102345
          Length = 526

 Score =  215 bits (111), Expect = 9e-61
 Identities = 123/127 (96%), Gaps = 2/127 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccatccccacagggtggcccaggtaaggagcctttgctgagctggccttgtcattttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 gtccatccccacagggtggcccaggtaaggagcctttgctgagctggcccagtcattttt 260

                                                                       
Query: 61  cc-ttcgggttggcacatctggaccaagtgacctcctacttgtgggtgggaagcatggtt 119
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctt-gggttggcacatctggaccaagtgacctcctacttgtgggtgggaagcatggtt 319

                  
Query: 120 caaaata 126
           |||||||
Sbjct: 320 caaaata 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)