Query= MSMg01no493_a01.b1 MSMg01no493_a01.b1 CHROMAT_FILE:
MSMg01no493_a01.b1 PHD_FILE: MSMg01no493_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:23 2005
(694 letters)
>mm_chr6_41659037_41660130
Length = 1094
Score = 1266 bits (655), Expect = 0.0
Identities = 674/681 (98%), Gaps = 2/681 (0%)
Strand = Plus / Minus
Query: 16 gaattcacagtggttgtgacagcttggttaaggcttgtgtaacaccaagccagatgaaat 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattcacagtggttgtgacagcttggttaaggcttgtgtaacaccaagccagatgaaat 706
Query: 76 cccactatgatgtgtggaggtaaacacaaagtcctattcctcacaggcaatcaatagctg 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cccactatgatgtgtggaggtaaacacaaagtcctattcctcacaggcaatcaatagctg 646
Query: 136 gttgaagatgaagaccagttttctttaaggctgtagctcttgcctcagtggaagtccaca 195
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 645 gttgaagatgaagaccagttttccttaaggctgtagctcttgcctcagtggaagtccaca 586
Query: 196 tacctaaaagtatatggaaaacactaaaaggatttagaatttattagaaaagtacacaat 255
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 585 tacctaaaagtatatggaaaacactaaagggatttagaatttattagaaaagtacacaat 526
Query: 256 gttaggtaggcatgaaattggggtgtaaagctgggaggagatagtgaagtgggatgaaaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 525 gttaggtaggcatgaaattggggtgtaaagctgggaggagatagtgaagtgggataaaaa 466
Query: 316 cattcaaaatgcaatgtataaaattctcaagtcattaaaatattaaaacaaataaattaa 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cattcaaaatgcaatgtataaaattctcaagtcattaaaatattaaaacaaataaattaa 406
Query: 376 attaagctgggcatagtgtcctatctctataatcttaacattcaaaaggcgaaggcaaga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 attaagctgggcatagtgtcctatctctataatcttaacattcaaaaggcgaaggcaaga 346
Query: 436 aaatttagagttaaaggttagaccaggctgcatagcaagatcctgcctcagaaatataat 495
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agatttagagttaaaggttagaccaggctgcatagcaagatcctgcctcagaaatataat 286
Query: 496 taattacttaataatgaaaataatagacttaggagtctgaacctgaatataggactttat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 taattacttaataatgaaaataatagacttaggagtctgaacctgaatataggactttat 226
Query: 556 cttagttttccagacgtgaaggatctaaatacatgcaaataaagctgcaaatggaactcc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cttagttttccagacgtgaaggatctaaatacatgcaaataaagctgcaaatggaactcc 166
Query: 616 aaagtgttcatgttccatgtgagggtgtgactgagcctgtgctaaaggcat--gagagga 673
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 165 aaagtgttcatgttccatgtgagggtgtgactgagcctgtgctaaaggcataagagagga 106
Query: 674 tagaaacaagtgtccgaagca 694
|||||||||||||| ||||||
Sbjct: 105 tagaaacaagtgtctgaagca 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_a01.g1 MSMg01no493_a01.g1 CHROMAT_FILE:
MSMg01no493_a01.g1 PHD_FILE: MSMg01no493_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:23 2005
(668 letters)
>mm_chr6_41630825_41631894
Length = 1070
Score = 1245 bits (644), Expect = 0.0
Identities = 663/670 (98%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 1 tgaaggtgaaacaggtaccctgggatgtaaatcctagaacattcctgaggaattctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaggtgaaacaggtaccctgggatgtaaatcctagaacattcctgaggaattctgtgt 260
Query: 61 aactcctgatgttagacagcagaaattgagaatgatcaaaggacagagaaacctttctac 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aactcctgatgttagacagcagaaattgagagtgatcaaaggacagagaaacctttctac 320
Query: 121 actgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttccttta 380
Query: 181 tcaaatactatcttgcattgtctttatggctttcagtgagacatattactgttgttgaat 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tcaaatactatcttgcattgtctttatggctttcagtgagacacattactgttgttgaat 440
Query: 241 gtattccttcaacgggcctgtgagattagtggaaataaagcaagggcagcttttgaatga 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gtattccttcaacgggcctgtgagattagtggaaataaaacaagggcagcttttgaatga 500
Query: 301 gaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagcattga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagcattga 560
Query: 361 agcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctcccggtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctcccggtct 620
Query: 421 ttgtacttcttaggaatctttgagtcagacagacttgggtgggatatgcttgagacgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtacttcttaggaatctttgagtcagacagacttgggtgggatatgcttgagacgctc 680
Query: 481 tcctggagagccttaggacctccccttccttttgaggtaaatgagag--ttctgatcaga 538
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tcctggagagcctcaggacctccccttccttttgaggtaaatgagagagttctgatcaga 740
Query: 539 gaacaaaatatttatagcagagcaagaatggaaacaaaaggagatatagaaaggaagaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaacaaaatatttatagcagagcaagaatggaaacaaaaggagatatagaaaggaagaag 800
Query: 599 agctacaggagacaaggagaaacaatgttcttaccccaggagtgggagggtcaccttgta 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agctacatgagacaaggagaaacaatgttcttaccccaggagtgggagggtcaccttgta 860
Query: 659 gagcattttt 668
||||||||||
Sbjct: 861 gagcattttt 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space: 697480
Effective search space used: 697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
