Query= MSMg01no493_n03.b1 MSMg01no493_n03.b1 CHROMAT_FILE:
MSMg01no493_n03.b1 PHD_FILE: MSMg01no493_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(622 letters)
>mm_chr6_122512621_122513642
Length = 1022
Score = 1187 bits (614), Expect = 0.0
Identities = 617/618 (99%)
Strand = Plus / Plus
Query: 5 gaattctcaggggtatcagtgacggattcttctattctttccctctaaggctcactttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggggtatcagtgacggattcttctattctttccctctaaggctcactttca 264
Query: 65 ggggtccttttctgacaaggtcacggggctgtcctacagtctctgtctgagcaatcacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggtccttttctgacaaggtcacggggctgtcctacagtctctgtctgagcaatcacaa 324
Query: 125 gccattctctcaaaagcattaatactcaggcacatgctgtatgttttcactgtccgtcgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccattctctcaaaagcattaatactcaggcacatgctgtatgttttcactgtccgtcgt 384
Query: 185 gtttttcacatttgtatgtgaaagggcttggggtgggatttgaagaatgcacgatcgcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttttcacatttgtatgtgaaagggcttggggtgggatttgaagaatgcacgatcgcct 444
Query: 245 ctgggtgatttcaataaaggatcttaaaatgcagatgaggactacgaagaaatcactctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgggtgatttcaataaaggatcttaaaatgcagatgaggactacgaagaaatcactctg 504
Query: 305 aaaatgagttcacgcctcaagaagcaaatcccctggaaacacagactctttttcattttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatgagttcacgcctcaagaagcaaatcccctggaaacacagactctttttcattttt 564
Query: 365 aatgtcattagtttactcacagtcttatcaagaagaagagttcaagggttcaacccaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgtcattagtttactcacagtcttatcaagaagaagagttcaagggttcaacccaatt 624
Query: 425 ttcagatcgcgtcccttaaacatcagtaattctgttaaagggatcaaacatccttatttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcagatcgcgtcccttaaacatcagtaattctgttaaagggatcaaacatccttatttc 684
Query: 485 ttaaataactggtgccttgctgtagagaaaggagcaaagcgcccagatccaaagtatata 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaactaactggtgccttgctgtagagaaaggagcaaagcgcccagatccaaagtatata 744
Query: 545 gttatcatagccaggaaccgctactcgttttccattacaaatggcaaattcttccccggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttatcatagccaggaaccgctactcgttttccattacaaatggcaaattcttccccggg 804
Query: 605 ctctcctcatagtgcctg 622
||||||||||||||||||
Sbjct: 805 ctctcctcatagtgcctg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_n03.g1 MSMg01no493_n03.g1 CHROMAT_FILE:
MSMg01no493_n03.g1 PHD_FILE: MSMg01no493_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(485 letters)
>mm_chr6_122692543_122693424
Length = 882
Score = 812 bits (420), Expect = 0.0
Identities = 463/490 (94%), Gaps = 22/490 (4%)
Strand = Plus / Minus
Query: 1 acaatgggtggggtggcgtatgctgtggtgaggaattggggctgggtacttcacttgatc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 583 acaatgggtggggtggcgtatgctgtggtgaggaattggggctgtgtacttcacttgatc 524
Query: 61 cttcttggagcctcaagtcaacaaggctgccttcacacctggatgcgttttcttggactg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cttcttggagcctcaagtcaagaaggctgccttcacacctggatgcgttttcttggactg 464
Query: 121 cctcgcctttccctccttcaaggcgagtgcacccagcctgtaatgaaaacgcattatcaa 180
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 463 cctcgcctttccctccttcaaggcgagtacacccagcctataatgaaaacgcattatcaa 404
Query: 181 ttctctgcttcctgctccttggatgactttcaactgaaagc-----tgactctactctgc 235
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 403 ttctctgcttcctgctccttggatgactttcaactaaaagcagcactgactctactctgc 344
Query: 236 gttcctgtctttagactgattccatcccgactgccttcaaatttgcccgccctccaaact 295
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtt--------tagactgattccatcccgactgccttcaaatttgcccgccctccaaact 292
Query: 296 ttgttttagtatttttttctgtgaaacaaaaaggctgtcggctcttgaaaaggggaagga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttgttttagtatttttttctgtgaaacaaaaaggctgtcggctcttgaaaaggggaagga 232
Query: 356 atttggaagcgctttgaggggaaaaaaaaaaaaaaaaaaagaaccacgaggaggatgtgg 415
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 231 atttggaagcgctttgaggggaaaaaaaaaa---------gaaccacgaggaggatgtgg 181
Query: 416 taaaaagcaggagggggtgggtgatggtggttgattgcaaaggacaggggctgggggtgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 taaaaagcaggagggggtgggtgatggtggttgattgcaaaggacaggggctgggggtgg 121
Query: 476 agcggtgaag 485
||||||||||
Sbjct: 120 agcggtgaag 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 882
Length adjustment: 10
Effective length of query: 475
Effective length of database: 872
Effective search space: 414200
Effective search space used: 414200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
