Query= MSMg01no493_p02.b1 MSMg01no493_p02.b1 CHROMAT_FILE:
MSMg01no493_p02.b1 PHD_FILE: MSMg01no493_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:39 2005
(707 letters)
>mm_chr6_126899238_126900344
Length = 1107
Score = 1297 bits (671), Expect = 0.0
Identities = 695/703 (98%)
Strand = Plus / Minus
Query: 5 gaattcacatcttgatctgtgagtgatttccccagctcctgcatcaccttttccatttca 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattcacatcttgatctgtgagcgatttccccagctcctgcatcaccttttccatttca 848
Query: 65 ataccttgtctaaaacacaaattaacaaataagatatattcaccacacgtttagggcata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ataccttgtctaaaacacaaattaacaaataagatatattcaccacacgtttagggcata 788
Query: 125 cagccacgagtgaaaacataatttttaattttatgaaggataacatatctgagatttaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cagccacgagtgaaaacataatttttaattttatgaaggataacatatctgagatttaat 728
Query: 185 actccatcttgaaaatgctcccagtcctcataaaagagtatgtgagcactgacagctatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 actccatcttgaaaatgctcccagtcctcataaaagagtatgtgagcactgacagctatg 668
Query: 245 acttcaagtaccaagcgtgcctcacgtgcagccagatcatcacgccgagcttcatctata 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 667 acttcaagtaccaagcgtgcctcacgtgcagccagatcatcacgctgagcttcatctata 608
Query: 305 gctggaaacagatgaaatccagcaagctttcatgactgttcagtagttcaaaccccttct 364
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 607 gctggaaacagatgaaatccagcaagctttcatggctgttcagtagttccaaccccttct 548
Query: 365 catctagttcctcaaaaatagctccgtcagcagcccaagcagatttcccaggcgagtgga 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 catctagttcctcaaaaagagctccgtcagcagcccaagcagatttcccaggcgagtgga 488
Query: 425 tatgaactgacaggagctcaatgctggaagctagtctactacacccagaaactactgatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tatgaactgacaggagctcaatgctggaagctagtctactacacccagaaactactgatt 428
Query: 485 gcggttgaaaagatacacagtaagtcacacagttactttaagaagcaatgtaaactacaa 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acggttgaaaagatacacagtaagtcacacagttactttaagaagcaatgtaaactacaa 368
Query: 545 cctgatggtgtagcctggggctactccttctattcgcccagagaaaccatggacagaatg 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 cctgatggtgtagcctggggctactccttctattcacccagagaaaccatggacagaatg 308
Query: 605 ggcttccctacaggagaagccaatcagcgatggtggagtccagacagaagtcatttaggg 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcttccctacaggagaagtcaatcagcgatggtggagtccagacagaagtcatttaggg 248
Query: 665 agaccaggagggcactagggaggcttcggtattgctggaaaac 707
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agaccaggagggcactagggaggcttcggtattgctggaaaac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no493_p02.g1 MSMg01no493_p02.g1 CHROMAT_FILE:
MSMg01no493_p02.g1 PHD_FILE: MSMg01no493_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:39 2005
(566 letters)
>mm_chr6_126740217_126741182
Length = 966
Score = 1027 bits (531), Expect = 0.0
Identities = 558/567 (98%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 1 agtcactgagttggttgggt-ctgagtgtgcaaacacagtaaattcatctccacggtaga 59
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||| ||
Sbjct: 201 agtcactgagttggttgggtcctgagtgtgcaaacccagtagattcatctccatggtgga 260
Query: 60 ttcataatttgataatatttttggtggggggctgggtggaggaggccaccagggacatct 119
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttcataatttgataatatttttggt-gggggctgggtggagaaggccaccagggacatct 319
Query: 120 tattaggggttgcatcttgtccctggtctcttccccatccctcctgtggcttgcacccca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattaggggttgcatcttgtccctggtctcttccccatccctcctgtggcttgcacccca 379
Query: 180 gctagcaactttgctatgatgctctgcctcaccgtaatcccacaacaatggagacatgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctagcaactttgctatgatgctctgcctcaccgtaatcccacaacaatggagacatgca 439
Query: 240 tccatgaattgaaaccttgagctgaaataaagcttttggtcctaagttgttggtcacaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccatgaattgaaaccttgagctgaaataaagcttttggtcctaagttgttggtcacaga 499
Query: 300 tgttctgctgcagcaatgaatagctggttaaacaccatctaaaagaatccccactcgcac 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 500 tgttctgctgcagcaatgaatagctgattaaacaccatctaaaagaatccccacttgcac 559
Query: 360 agatgacagctggagcttagctttgaagaattctctcaacagaagctaagaggccatcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agatgacagctggagcttagctttgaagaattctctcaacagaagctaagaggccatcaa 619
Query: 420 cagaagcccaagtgatgctgatgacagggaagcagccttccttcacattcccaacctgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagaagcccaagtgatgctgatgacagggaagcagccttccttcacattcccaacctgat 679
Query: 480 agagacttagtcagggttctctagagttgttaggaaatgtctctctatattgagggaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agagacttagtcagggttctctagagttgttaggaaatgtctctctatattgagggaatt 739
Query: 540 tgttatgatgacttacagtctgtaagt 566
|||||||||||||||||||||||||||
Sbjct: 740 tgttatgatgacttacagtctgtaagt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
