BAC Information

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BAC

Clone NameMSMg01-494E07
Chromosome6 (Build37)
Map Location 17,877,734 - 17,878,325
singlet/doubletsinglet
Overlap geneSt7
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494E07.T7 (MSMg01no494_e07.b1)MSMg01-494E07.TJ (MSMg01no494_e07.g1)
ACCAG571589AG571590
length735740
length of high quality
(start - end)
595 (35 - 629)473 (66 - 538)
definitionCHROMAT_FILE: MSMg01no494_e07.b1 PHD_FILE: MSMg01no494_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:04 2005CHROMAT_FILE: MSMg01no494_e07.g1 PHD_FILE: MSMg01no494_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTT
TGCTCCCTGTGCTACAGATAATCTCAATAGTGTTCTGTTTGACAGGAAAA
ATATCAACCAAGTGTCAGCTAAATATCAAAACGTGTCTTCTATCCGTCTG
TGTAACGGGAGGGTGACCGTTTGTAATTGTCTCGTGTCTCCAGCCTCTAT
CCATCTGTGGCTTTGTTGATACTCGCTCGGATGCTGCTGAGGGCTTCTGA
CCCATATGGCACTGAGCAGTGTGTTACCTAGGAAGTGCCTTTGACTAGGG
AGAGCGGAAGACGGCACATGCTGTCTAGGTAGACTAGGTTGTACAGGATG
TTTTGGTGTGCTTTGGAACTTTAGTGACACCTCTGACGAAAGGGGCAAGC
AGCATCAAGATGAAGAGCGTGCCCCATGAAGAAAGAAGTAGAAATGCCGC
TTGTGTACCATTTTTTTAAAGTAGCCTAGGTTTACTGCTTTGTTTTGAAC
CACATATCTGTACAATTTTAATTTATCTAAAATATGTTTCTAAAAGACTT
TTAGGAATTACATAGTCATTTGAAAATAGTATCTTCAAATAGTCTATTTC
TATTCATATTTGAACCACTCAATAAGTGTCTTCTTAGGATTTACACTGAC
AAAATCTCTGGACATTTGGTGAAAGCTTTAAGAGTCATGAAACCAGTGCT
CGTCTCAGTGAAAGGGACAGGAGGTAGGAGGGAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGAATGCAAACAAAATTCTAGGGCTGCATGCAA
AGTTCTATAGGTTGTATATTTACGGCAATGACAGGAGACACCATATATAT
CCTATGTAACATGAATGGTACTCACTAGAGCTGTGATTTATATAACTTAC
CTATTGCTATTCAGTGGCAAATTATATGTCAAAAATTGTATGTCAAAATA
AAAGCTTATATTTTCTTCTCATTTAGTATCTTAGCTATGATAAGACACTG
TGGTAGTTTAAATGCCCCCAACAGGACCATGTATTTGAACGCTTAGACAC
CAGGGAGTTGAATTGTTTAAAAGGATTATAAGTGTGTCATTAGGATAGGC
TTTGAGGTTTCTAGAGCCCACACCAGGCCCATTGTGTCTCCCTTTACCTA
TGGATCAGGATTTAGAACTTTCTAGCTCCTTCTCCAGAACTGTGTCTGCC
TGCGTGCCACCATGCTCCTTACCAGGAGAATGGACCAACCTCTGAGACTA
TATGCAAGTCCCCAAATAAATGCTTTCTTCAATAAGAGTTACCTTGGCCA
TGGTGTCTCCTCATAGTAATAGGACAGTGACTGANATAGACACCATGACC
AAGGCACCTTATAAAAGAAAGTGTTTAATTTGGGCATATAGTTTCAGACA
GAGTCCCTGAGAACAGGACAAAGGCATGAAGGTAGCAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_e07.b1 MSMg01no494_e07.b1 CHROMAT_FILE:
MSMg01no494_e07.b1 PHD_FILE: MSMg01no494_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:04 2005
         (595 letters)



>mm_chr6_17877531_17878525
          Length = 995

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctttgctccctgtgctacagataatctcaatagtgttctgtttgacagga 63
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctcaggtccctgtgctacagataatctcaatagtgttctgtttgacagga 263

                                                                       
Query: 64  aaaatatcaaccaagtgtcagctaaatatcaaaacgtgtcttctatccgtctgtgtaacg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaatatcaaccaagtgtcagctaaatatcaaaacgtgtcttctatccgtctgtgtaacg 323

                                                                       
Query: 124 ggagggtgaccgtttgtaattgtctcgtgtctccagcctctatccatctgtggctttgtt 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagggtgactgtttgtaattgtctcgtgtctccagcctctatccatctgtggctttgtt 383

                                                                       
Query: 184 gatactcgctcggatgctgctgagggcttctgacccatatggcactgagcagtgtgttac 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gatactcgctcggatgctgctgagggcttctgacccatatggcactgagcagtgtggtac 443

                                                                       
Query: 244 ctaggaagtgcctttgactagggagagcggaagacggcacatgctgtctaggtagactag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaggaagtgcctttgactagggagagcggaagacggcacatgctgtctaggtagactag 503

                                                                       
Query: 304 gttgtacaggatgttttggtgtgctttggaactttagtgacacctctgacgaaaggggca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttgtacaggatgttttggtgtgctttggaactttagtgacacctctgacgaaaggggca 563

                                                                       
Query: 364 agcagcatcaagatgaagagcgtgccccatgaagaaagaagtagaaatgccgcttgtgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcagcatcaagatgaagagcgtgccccatgaagaaagaagtagaaatgccgcttgtgta 623

                                                                       
Query: 424 ccatttttttaaagtagcctaggtttactgctttgttttgaaccacatatctgtacaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatttttttaaagtagcctaggtttactgctttgttttgaaccacatatctgtacaatt 683

                                                                       
Query: 484 ttaatttatctaaaatatgtttctaaaagacttttaggaattacatagtcatttgaaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaatttatctaaaatatgtttctaaaagacttttaggaattacatagtcatttgaaaat 743

                                                               
Query: 544 agtatcttcaaatagtctatttctattcatatttgaaccactcaataagtgt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtatcttcaaatagtctatttctattcatatttgaaccactcaataagtgt 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)