BAC Information

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BAC

Clone NameMSMg01-494F19
Chromosome6 (Build37)6 (Build37)
Map Location 42,914,930 - 42,915,52867,686,381 - 67,686,960
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444
Downstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494F19.T7 (MSMg01no494_f19.b1)MSMg01-494F19.TJ (MSMg01no494_f19.g1)
ACCAG571661AG571662
length770761
length of high quality
(start - end)		600 (54 - 653)569 (60 - 628)
definitionCHROMAT_FILE: MSMg01no494_f19.b1 PHD_FILE: MSMg01no494_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:11 2005CHROMAT_FILE: MSMg01no494_f19.g1 PHD_FILE: MSMg01no494_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:11 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(42,914,930 - 42,915,528)(67,686,381 - 67,686,960)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCGTGT
CTGCACATATCATTAAAGGAGGTATGATAAGAATTCAGATCCCAGATACC
CTGCAAACTAATGATTCAATTGTTGTTTTAGGCTGACAGGAATTGTCCTC
CTCCTCTTATGAATTGAAAGTGTCCTGAGTGAATTTTCCTTAGATCCTGG
GGTTATCATGTGAGAACTCAGAAATGTCTTACAAGCTGCTACAATCAAAG
AGAGACACAGATACAGGTTTTAGATATCAGCAGAAAGCGAGTGCAGGAAA
GAGGCAGAGGAAGCAGCATTACTATTAATCCATCCAAAAGCTGTTGTGCT
GTACTTCTGATGGGGACGGTGCTTTGTATAATTGAAGAAGTTGCCTTATG
ACTAGGTGTTTGTTCTCTCCCTTAGAAAATCAGTGTGTTCAGTCTCATGC
TGCAACATTGTAGGGCCTTTCATAGTAGCTTCTGAAAGACCCCAAGGATT
CCCTCGCTTGAGGACAAAGTATTGAAGACTGAGAGATTGCATTTTCTCAT
GATGAATAATGTTGGATAGTAAAGACAAAGACATTGATGTGTGATATGTG
GTATCCAAATATTTGTGTAATAAGGATGCACAAACCTTTCTTCATGTGAG
CTTGTTTGGAGTCTTTGACCCACCCACAGATTTCGAGGCTGCTGTCTGAA
TCANGATAGTTCCTCGAATTATTTGCTCAGTGCTTNCAGTACAAAAGTGA
AAATAGTAGTGTTTTACTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAA
AAAAAAACAAAAAAACACACACAAAAAAGAAAAATACCTTTGGGAATTAT
AAGTACAAGCTTCAGGTCAGACAAAAATGCTACACAGAAAAAAAAAACAA
CTCTCTGTAGAAAACTTAAAGGAAAACACATCAAGAACAAACCCAATTCT
ACATGAAATTGTATATTCATAATGATTTGATACAGAGTATAATTAATTAA
TTCCATAAAATGTTCCAAGAGAGTGGATGTGTAGAGAATGAGTTAAAATA
CATGAAATTGATTATTTACTGTAGCAAAAATTACAATACTTAAAATCCAG
AACTTAATCAAATAATAGCCTGTAAATGAAAATGTGCTAATGTAAGAACC
CCCTTTCGGGTACCCCCACTCTAGTCTCAGGAGTGAGAGAGCACCCAAAG
AAACAGGAGAATCCAATTTGCTGTAATCACATGAGGCAGTTTAATGACGG
AGCTCCAGACCAACATGCATCCCGCACAGGAGACAATGGATGTTAGCTTA
AAAGCTAGGGGGTTTAATGGGGTAAAGGGCCCTAGGGGTGTAGAATTCAG
CATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAAATTACATG
TATGTGCACGGTGTCAGAATTCTGTGAGTTGTTGACTCAGTTCAGATAGA
CCTGTTATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_f19.b1 MSMg01no494_f19.b1 CHROMAT_FILE:
MSMg01no494_f19.b1 PHD_FILE: MSMg01no494_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:11 2005
         (600 letters)



>mm_chr6_42914727_42915728
          Length = 1002

 Score =  598 bits (309), Expect = e-175
 Identities = 531/609 (87%), Gaps = 22/609 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   atatcattaaaggaggtatgataagaattcagatcccagataccctgcaaactaatgatt 63
           |||||| |||||||||||||||||||||||||||||||||  || ||||||||| |||||
Sbjct: 204 atatcactaaaggaggtatgataagaattcagatcccagaggccttgcaaacta-tgatt 262

                                                                       
Query: 64  caattgttgttttaggctgacagga-attgtcctcctcctcttat---gaattgaaagtg 119
           ||| ||| |||||||| | | |||| ||  || ||||||||||||   ||| ||||||||
Sbjct: 263 caactgtggttttaggtttagaggacatc-tcatcctcctcttatcatgaactgaaagtg 321

                                                                       
Query: 120 tcctgagtgaattttccttagatcct-ggggttatcatgtgagaactcagaaatgtctta 178
           |||| ||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||| 
Sbjct: 322 tcctcagtgaattttcctcaga-ccttggggctatcatgtgagaactcagaaatgtcttc 380

                                                                       
Query: 179 caagc-tgctacaatcaaagagagacacagatacaggttttagatatcagc-agaaagcg 236
           || || | ||||||| ||||||  ||||||||||||||||||||||||||| |||||| |
Sbjct: 381 caggcct-ctacaatgaaagagctacacagatacaggttttagatatcagccagaaagtg 439

                                                                       
Query: 237 agtgcaggaaagaggcagaggaagcagcattactattaatccatccaaaagctgttgtgc 296
           ||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| ||||||| 
Sbjct: 440 agtgctggaaagagtcagagaaagcagcatgactattaatccattcaaaagatgttgtgt 499

                                                                       
Query: 297 tgtacttctgatggggacggtgctttgtataattgaagaagttgccttatgactaggtgt 356
           |||||| |||||||| || |||||||| ||| |||||| || ||||||||||||||||||
Sbjct: 500 tgtactcctgatgggtaccgtgctttgcata-ttgaaggagctgccttatgactaggtgt 558

                                                                       
Query: 357 ttgttctctcccttagaaaatcagtgtgttcagtctcatgctgcaacattgtagggcctt 416
           |||| ||| ||| ||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 559 ttgtcctcacccctagaaaatcagtgtgttcagtctcatgttaaaacattgtagggcctt 618

                                                                       
Query: 417 tcatagtagcttctgaaagaccccaaggattccctcgc-ttgaggacaaagtattgaaga 475
           |||||||   ||||||||||| | ||||||||||| || ||||||||||| | |||||||
Sbjct: 619 tcatagt---ttctgaaagactcaaaggattccct-gccttgaggacaaatttttgaaga 674

                                                                       
Query: 476 ctga-gagattgcattttctcatgatg---aataatgttggatagtaaagacaaagacat 531
           |||| ||||||| |||| ||| |||||   |||||||||||||||| |||| ||||||||
Sbjct: 675 ctgaagagattgtattt-ctcctgatgctgaataatgttggatagtcaagaaaaagacat 733

                                                                       
Query: 532 tgatgtgtgatatgtggtatccaaatatttgtgtaataaggatgcacaaacctttcttca 591
            |||||||||||||| || | ||||||||||||| |||||||| |||| || ||||||||
Sbjct: 734 agatgtgtgatatgtagtgttcaaatatttgtgtcataaggattcacatacatttcttca 793

                    
Query: 592 tgtgagctt 600
           |||||||||
Sbjct: 794 tgtgagctt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space:   585280
Effective search space used:   585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_f19.g1 MSMg01no494_f19.g1 CHROMAT_FILE:
MSMg01no494_f19.g1 PHD_FILE: MSMg01no494_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:11 2005
         (569 letters)



>mm_chr6_67686329_67687298
          Length = 970

 Score = 1044 bits (540), Expect = 0.0
 Identities = 567/580 (97%), Gaps = 11/580 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagagctatacagagaaaccctgtctcg--aaaaaaaaaaacaaaaaaaca 58
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 632 caggacagccagagctatacagagaaaccctgtctcgaaaaaaaaaaaaacaaaaaaaca 573

                                                                       
Query: 59  cacacaaaaaagaaaaatacctttgggaattataagtacaagcttcaggtcagacaaaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cacacaaaaaagaaaaatacctttgggaattataagtacaagcttcaggtcagacaaaaa 513

                                                                       
Query: 119 tgctacacag-aaaaaaaaaacaactctctgtagaaaacttaaaggaaaacacatcaaga 177
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgctacacagaaaaaaaaaaacaactctctgtagaaaacttaaaggaaaacacatcaaga 453

                                                                       
Query: 178 acaaacccaattctacatgaaattgtatattcataatgatttgatacagagtataattaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acaaacccaattctacatgaaattgtatattcataatgatttgatacagagtataattaa 393

                                                                       
Query: 238 ttaattccataaaatgttccaagagagtggatgtgtagagaatgagttaaaatacatgaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttaattccataaaatgttccaagagagtggatgtgtagagaatgagttaaaatacatgaa 333

                                                                       
Query: 298 attgattatttactgtagcaaaaattacaatacttaaaatccagaacttaatcaaataat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 attgattatttactgtagcaaaaattacaatacttaaaatccagaacttaatcaaataat 273

                                                                       
Query: 358 agcctgtaaatgaaaatgtgctaatgtaagaaccccctttcgggtacccccactctagtc 417
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 272 agcctgtaaatgaaaatgtgctaatgtaagaaacccctttcgggtacccccactctagtc 213

                                                                       
Query: 418 tcaggagtgagagagcacccaaagaaacaggagaatccaatttgctgtaatcacatgagg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tcaggagtgagagagcacccaaagaaacaggagaatccaatttgctgtaatcacatgagg 153

                                                                       
Query: 478 cagtttaatgacggagctccagaccaacatgcatcccgcacaggagacaatggatgt--- 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 152 cagtttaatgacggagctccagaccaacatgcatcccgcacaggagacaatggatgtcga 93

                                                   
Query: 535 ---t-a-gcttaaaagctagggggtttaatggggtaaagg 569
              | | |||| ||||||||||||||||||||||||||||
Sbjct: 92  ccatgaggcttgaaagctagggggtttaatggggtaaagg 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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