Query= MSMg01no494_m22.b1 MSMg01no494_m22.b1 CHROMAT_FILE:
MSMg01no494_m22.b1 PHD_FILE: MSMg01no494_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
(638 letters)
>mm_chr6_53860485_53861520
Length = 1036
Score = 849 bits (439), Expect = 0.0
Identities = 458/465 (98%), Gaps = 3/465 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtggatctcacagaaatgtttaacaccacctcctgagatggagaaggagaca 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggaattcagtggatctcaaagaaatgtttaacaccacctcctgagatggagaaggagaca 403
Query: 64 gtaaaatgtcattaaaaaaagtccttactcatgtttaatgcttagattggggtactatta 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 402 gtaaaatgtcattaaaaaaagtccttactcatgtttattgcttagattggggtactatta 343
Query: 124 ggctctgttagtctagagtcaggatgcaaagccaatgcctgtgttttgtttgcattctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggctctgttagtctagagtcaggatgcaaagccaatgcctgtgttttgtttgcattctcc 283
Query: 184 atttctccatttaccacacctcccccccccaacacctccataacctccacccccctcctc 243
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 282 atttctccatttaccacacct--ccccccctacacctccataacctccacccccctcctc 225
Query: 244 taccacaattaccaccaccatctcctcctccttctcttcctcttcttcctccactaccct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taccacaattaccaccaccatctcctcctccttctcttcctcttcttcctccactaccct 165
Query: 304 gactatccctaccacttcctccaccaccacctcctattcttcctccttctcctcctccac 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gactatccctaccacttcctccaccaccacctcctattcttcctccttctcctcctcca- 106
Query: 364 cccccaccatcaccatcctctcttccactaccacctccatcacctccccctgcaccacta 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cccccaccatcaccaacctctcttccactaccacctccatcacctccccctgcaccacta 46
Query: 424 ccaccacctccaccatcatcaaccactgtcaccatcacctccatc 468
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ccaccacctccaccatcatcaaccactgtcaccatcacctccatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1036
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1026
Effective search space: 644328
Effective search space used: 644328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_m22.g1 MSMg01no494_m22.g1 CHROMAT_FILE:
MSMg01no494_m22.g1 PHD_FILE: MSMg01no494_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
(615 letters)
>mm_chr6_53710633_53711647
Length = 1015
Score = 1158 bits (599), Expect = 0.0
Identities = 611/615 (99%)
Strand = Plus / Plus
Query: 1 tcccttctgcagggagtgttttccggccagaatgcataaaccgttgaaaacatctcccgt 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcccttctgcagggagtgttttcaggccagaatgcataaaccgttgagaacatctcccgt 260
Query: 61 ggagtctgcagagaggaagataatccattaccctgcaggcagttggccttggcgggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtctgcagagaggaagataatccattaccctgcaggcagttggccttggcgggaagg 320
Query: 121 actggggccgcctccagtgacacaaaggagagctgcatttgaaatctccccaaagccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggggccgcctccagtgacacaaaggagagctgcatttgaaatctccccaaagccagg 380
Query: 181 cctactttcccccacgggttttgcatttctcagacagcaatgcaaaaggagatagagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctactttcccccacgggttttgcatttctcagacagcaatgcaaaaggagatagagaac 440
Query: 241 agaaatgcaaatcgcaacctttaagaaaatatataaacccaaaagatgaataagggcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatgcaaatcgcaacctttaagaaaatatataaacccaaaagatgaataagggcctt 500
Query: 301 ctagttccatagatggcaaaagcatccctttggctaaatgaaaaacgcattcccagctgc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagttccatagatgccaaaagcatccctttggctaaatgaaaaacgcattcccagctgc 560
Query: 361 accaagtcttcccatattgcccagatgaagccagcctctgcaagagacggccatacttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaagtcttcccatattgcccagatgaagccagcctctgcaagagacggccatacttca 620
Query: 421 aagtgcagcacagaacctctttatcaccacaggatttcacaagaatctagagaaaggcag 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagcagcacagaacctctttatcaccacaggatttcacaagaatctagagaaaggcag 680
Query: 481 aagaaatgagggcaagctaaggctgccttaaagaagcctggttgtagacactgagctgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaatgagggcaagctaaggctgccttaaagaagcctggttgtagacactgagctgag 740
Query: 541 ggccagcatcactgagggaagcctggagagaggcaagcagaaccggcatccagtgctcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccagcatcactgagggaagcctggagagaggcaagcagaaccggcatccagtgctcac 800
Query: 601 atccatctggggaga 615
|||||||||||||||
Sbjct: 801 atccatctggggaga 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
