BAC Information

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BAC

Clone NameMSMg01-494O07
Chromosome6 (Build37)
Map Location 115,984,252 - 115,984,793
singlet/doubletsinglet
Overlap geneTmcc1
Upstream gene1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494O07.T7 (MSMg01no494_o07.b1)MSMg01-494O07.TJ (MSMg01no494_o07.g1)
ACCAG572065AG572066
length713711
length of high quality
(start - end)
553 (60 - 612)407 (68 - 474)
definitionCHROMAT_FILE: MSMg01no494_o07.b1 PHD_FILE: MSMg01no494_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:51 2005CHROMAT_FILE: MSMg01no494_o07.g1 PHD_FILE: MSMg01no494_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CATATTGCCTATAACATCACTCCAGGTGCATGTGTCAGAGAAATGGAACT
TCTTTGTACATATGACATGAACAGGGATGAACTTATAGTACCATGTGACA
GTGTCCTAGATATTTCCAGATTCTGTATCCTAAAGTGCTTGCAACTTGCT
GTTCAGTTTAGTGTTTCCCACTGTACTTGATACTCACAGGATATCAGGAT
ATGAAGCAGGGGCTATGCTTTTCCACTACCTGTACCTAATTCCTAAGCCC
TGACTTTTGCCTTCATCCCCTAATGTGGCTACTACAGACTGTTCACTTGG
GAAGCAAAGTGCCCATGATCTTTTCATCCTTTTTCCACATGTTAAATACA
CAGGCCACATACAGAGGTGCACACGCGTAATCCCAGCACTTGGGATGCTG
AGGCAAGAAGACTGTGAGTTCCAGACCAGCCTGGTTATACACAGCAAGTT
TCAAGCCAGACCGGGATACACAGTGAAATTGTTACACTTATCTAAAACAA
AACAAATGAAAAACATTTCATAGGGGCTGGCACTGTAGCACAGTTGGTAC
AGCAGGCCTTACCCAGAATGCATGAAGCCTTTCAGGTTCATCTTCACCAC
TACACACGCACGCACACGCACACGCACACGCACACGTACACACTCTCACA
TTCATTGTGTGTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAGCTCTTCCTACACCATCTCTGCCTGGATAC
TGCCATGCTCCTGCCTTGATGAAAAAGGACTGAACCTCTGAGGTTGTAAG
CCAACTCTAATTAGAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAGT
AAAACCCTAACTTAGAAGTTGGTACCAGGGACTGGGATATTGCTGTGATA
GGCCTAACCATATCTTTGTTTAGAAGAATGTAGATTTTGGGACTTTGGAT
TTGGAAATCCTATTAGGAATATGGAAGATGGTAGTGCTGAGGGTAATTTG
AACTGTGTAGGTCTGCTGTCCCAAGAAGTTTCAATGGAAAAGAATGTTAT
TATGTCATCTACACACTGTTTTTGTGATATTTGGATGAAGAACATGGCTG
CCTTTTACCATTGTTCAAAGGTCTGCCTGATACTAAAATGAAGAGATTTA
CATTAGTTACTTTGACAAAGTCTCAAAACAGCCTGCTATAAATTCTGTTG
TGTGCTTACTAAAATTAACTCTTATGAAGAGAACATTTTGATGAAAAGGA
GCAAGCTTAGAAAGGAAAAGTATGAAATATATGGTAATAATAAAGGGACA
TCACGAATTAAAATGGAGCTGAATCCTGTGTTCCAGGAGATTAAGGTAGT
GTTGATCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_o07.b1 MSMg01no494_o07.b1 CHROMAT_FILE:
MSMg01no494_o07.b1 PHD_FILE: MSMg01no494_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:51 2005
         (553 letters)



>mm_chr6_115984252_115985204
          Length = 953

 Score = 1040 bits (538), Expect = 0.0
 Identities = 541/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataacatcactccaggtgcatgtgtcagagaaatggaacttctttgtacatatgacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tataacatcactccaggtgcatgtgtcagagaaatggaacttctttgtacatatgacatg 483

                                                                       
Query: 61  aacagggatgaacttatagtaccatgtgacagtgtcctagatatttccagattctgtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacagggatgaacttatagtaccatgtgacagtgtcctagatatttccagattctgtatc 423

                                                                       
Query: 121 ctaaagtgcttgcaacttgctgttcagtttagtgtttcccactgtacttgatactcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctaaagtgcttgcaacttgctgttcagtttagtgtttcccactgtacttgatactcacag 363

                                                                       
Query: 181 gatatcaggatatgaagcaggggctatgcttttccactacctgtacctaattcctaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gatatcaggatatgaagcaggggctatgcttttccactacctgtacctaattcctaagcc 303

                                                                       
Query: 241 ctgacttttgccttcatcccctaatgtggctactacagactgttcacttgggaagcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgacttttgccttcatcccctaatgtggctactacagactgttcacttgggaagcaaag 243

                                                                       
Query: 301 tgcccatgatcttttcatcctttttccacatgttaaatacacaggccacatacagaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgcccatgatcttttcatcctttttccacatgttaaatacacaggccacatacagaggtg 183

                                                                       
Query: 361 cacacgcgtaatcccagcacttgggatgctgaggcaagaagactgtgagttccagaccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cacacgcgtaatcccagcacttgggatgctgaggcaagaagactgtgagttccagaccag 123

                                                                       
Query: 421 cctggttatacacagcaagtttcaagccagaccgggatacacagtgaaattgttacactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cctggttatacacagcaagtttcaagccagaccgggatacacagtgaaattgttacactt 63

                                                                       
Query: 481 atctaaaacaaaacaaatgaaaaacatttcataggggctggcactgtagcacagttggta 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62  atctaaaacaaaacaaatgaaaaacatttcaaaggggctggcactgtagcacagttggta 3

             
Query: 541 ca 542
           ||
Sbjct: 2   ca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)