Query= MSMg01no495_h10.b1 MSMg01no495_h10.b1 CHROMAT_FILE:
MSMg01no495_h10.b1 PHD_FILE: MSMg01no495_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:33 2005
(479 letters)
>mm_chr6_14350088_14350966
Length = 879
Score = 806 bits (417), Expect = 0.0
Identities = 461/477 (96%), Gaps = 4/477 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcg 63
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgcagaccaggctggcctcaagctcagaaatctgcctgcctctgcctcg 263
Query: 64 catgcgccaccacacctggctttgaggacacattcttaagtttggcattcagcccttggc 123
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgtgcgccaccacgcctggctttgaggacacattcttaagtttggcattcagcccttggc 323
Query: 124 cttcaaagaaccaaatttatctcaacatacaaaatgtatgaagaccgttccccaagatat 183
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 cttcaaagaatcaaatttatctcaacatacaaaatgtatgaataccgttccccaagatat 383
Query: 184 aaactctcagtattttatatttgtattcttttatttaatttattttctttatttaacata 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaactctcagtatttcatatttgtattcttttatttaatttattttctttatttaacata 443
Query: 244 tacataataccataatgggatatcatgtggattttttttatgtttgaaattacatataat 303
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 444 tacataataccataatgggatatcatgcagattttt---atgtttgaaattacatataat 500
Query: 304 gtgttggtacatgctaggcatcactctccatctcttaagcatttcttggacttatatcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgttggtacatgctaggcatcactctccatctcttaagcatttcttggacttatatcca 560
Query: 364 tgtgatttaatgcttgaaagaatcaaacttgcccatcttttcatttataatattcttatg 423
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgtgatttaatgcttgaaagagtcaaacttgcctatcttttcatttataatattcttatg 620
Query: 424 atagaagcattcaaaatactttctgcttgttttttgaa-tatactatatataatcat 479
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 621 atagaagcattcaaaatactttctgcttgttttttgaaatatactacatataatcat 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_h10.g1 MSMg01no495_h10.g1 CHROMAT_FILE:
MSMg01no495_h10.g1 PHD_FILE: MSMg01no495_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:33 2005
(655 letters)
>mm_chr6_14507891_14508945
Length = 1055
Score = 948 bits (490), Expect = 0.0
Identities = 546/588 (92%), Gaps = 37/588 (6%)
Strand = Plus / Minus
Query: 1 acctgaaattctaggaaagagtaaaactgggaatggaaatttcctgatgtcaaataattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acctgaaattctaggaaagagtaaaactgggaatggaaatttcctgatgtcaaataattt 492
Query: 61 ttctcagtccaggtgagaatgttttcaatcattgggcttctaggatgggaagacattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttctcagtccaggtgagaatgttttcaatcattgggcttctaggatgggaagacattctt 432
Query: 121 taataccctagtctaataaagtcacctgtcactacacagataaggaaattggaatccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 taataccctagtctaataaagtcacctgtcactacacagataaggaaattgaaatccagt 372
Query: 181 aaatcccaggaattatacaaattcccagttagggagtcctagagctaaaattgtccactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaatcccaggaattatacaaattcccagttagggagtcctagagctaaaattgtccactg 312
Query: 241 tgttggctgattctaactgggagcaacatttattggactgtacttatttagttttggctc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 311 tgttggctgattctaactgggagcaacgtttattggactgtacttatttagttttggctc 252
Query: 301 ggaatcatgaaaatgtacaaacgtaaatctagagcagcaatgaatccagaaagctttaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggaatcatgaaaatgtacaaacgtaaatctagagcagcaatgaatccaga---------- 202
Query: 361 gaaagtcaaataacctcatgttaaatatctacttatagtagatagctaattgatttgtta 420
||||||||||||||||||||||||||||||||||
Sbjct: 201 --------------------------atctacttatagtagatagctaattgatttgtta 168
Query: 421 aaaagtttacttatgtgagtacatgtaatcatccaggtaatagacaacaggatggattta 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 167 aaaagtttacttatgtgagtacatgtaatcatccaggtaatagacaacagaatggattta 108
Query: 481 attgtgtgagttatctcataatggtgaatgaaagccgtggatagacactttaaaacaaag 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 107 attgtgtgagttatctcataatggtgaatgaaag-cgtggatagacactttaaaacaaag 49
Query: 541 acaatatactgtttcattacaagacatgaagatctgtcaaactaggtt 588
|||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 48 acaatatagtctttcattacaagacatgaagatctgtcaaactaggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
