BAC Information

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BAC

Clone NameMSMg01-495K01
Chromosome6 (Build37)
Map Location 54,516,931 - 54,517,117
singlet/doubletsinglet
Overlap genenone
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K01.T7 (MSMg01no495_k01.b1)MSMg01-495K01.TJ (MSMg01no495_k01.g1)
ACCAG572627AG572628
length697757
length of high quality
(start - end)
188 (130 - 317)34 (216 - 249)
definitionCHROMAT_FILE: MSMg01no495_k01.b1 PHD_FILE: MSMg01no495_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:44 2005CHROMAT_FILE: MSMg01no495_k01.g1 PHD_FILE: MSMg01no495_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCGTGTTNATCAAAATTGCGGCCGCTAAACGACTATTATAGTTTCGGAT
CACGNNGAATCAAAAGTTTTACAAGAAGACAGGTGAAAGGCTACATATGT
TCTTATCTTGAGAGATATTGTCTTACACACACACACACACACACACACAC
ACACACACACAAACACACACACCATAGAGACTATAAAACTTTGATTTGTG
TTCATCTGATAACTGGAAAATACATGTGAATCTGCTGCTGCCCGCTGCTG
CTACTCTCTTCCCAGTGGACTCTCACAGCCTTTTCTTATCGAGGTAGATC
GGGTCTCAGCCCCTGATGTTTTTTTTTCAAAAGCCTTGAGGTGGGCATCA
CCTCTTTCCCCGTCATATTTTTATTAACCCTGGTGTGGAATCTTGCCTTT
GTTACTTGCTGCATGACCTTGGTTCACAAAGTGTGAATATGCTGCATCGT
CTGGTTTATGAGCACTATCACTATCGGCTAACATTATGGGAGGACTTTGA
CACATTGAATCAACCAAATGAAAAATGCTTATCTCTGCAGGGAATTCTCG
TCAGTCATCATGGCTCATACTTATAACCACTTTTAAAATGGTGCCAGGAT
AAAGTAAGACCTGGCTCCTTAAAGCTCTGGTTCTTCCCTTCGAAAGAATT
TTTTTCAAGAAATTAATTTCTCGTAAGATAGGAACTATTTTCCTGTT
NTCCTATGATAGGGGCAGGCAGGAGGGCGCCTGTTTCAAACAAGGGGGTG
AACTATAGATGTAACTACAAAAAGGCGCGAATGAGCTGGTAACCAATTTG
CATCTCATAAAGAGTCTAATACAAGGAATCTGATTTATGAGCTCACTGCA
GGTGTGACACTGAGTTTCAATCTGATGGTGGTTAAGGAATGTATCATTTG
AGAATCTGCAGATATGAGCCTCTGACTGTTCAGCTAATAGTTTACTGGAA
CATCTGAGCAGGATGGAGCTCCAGAGCCGATGTTGCTCTGGCGTTTCTCT
GGAGCTGCATCCTTCTTTTTTTTTTATACAGGCATCCTCACCTTGCCTTA
GCCATTTCCAGCTCTTAGTACAGCCTGCCAATTGCATGGGCTTTGTTCTG
CTGTAAGTCCGTGAATCTGGAACAAACTCATTTTTCTCATCGAGGACTCA
GCTTGCGGCTGTGATCTAGTGTTCAGCATCTTATTTTCTGTAGGTCTTAC
CTGGTACGTGTTTCCTTTACTGTATGACTCTGCCGTTGTTGCTGATTCTG
TGTCTGGTATAGACGTTGCCTGTCCCTGGAGTTTCCCCCTCATTCCCTTT
TCATTGAGTTCCCCTTGGATCTTTGGCTGTGCTCTCCCATTTATTAGTGC
CGTTTCTCTCCATTTGATCCGTGCCTGTTGTCCTTTTTTTGCTTTTATCG
GCTAGCGTTTCTTCCATTCTTTTTCCACTGTTTTTCGGCCCCCTCTTTGT
CTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k01.b1 MSMg01no495_k01.b1 CHROMAT_FILE:
MSMg01no495_k01.b1 PHD_FILE: MSMg01no495_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:44 2005
         (188 letters)



>mm_chr6_54516688_54517275
          Length = 588

 Score =  354 bits (183), Expect = e-102
 Identities = 186/187 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacacacacacacacacacacacacacacaaacacacacaccatagagactataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cacacacacacacacacacacacacacacacaaacacacacaccatagagactataaaac 371

                                                                       
Query: 61  tttgatttgtgttcatctgataactggaaaatacatgtgaatctgctgctgcccgctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttgatttgtgttcatctgataactggaaaatacatgtgaatctgctgctgcccgctgct 311

                                                                       
Query: 121 gctactctcttcccagtggactctcacagccttttcttatcgaggtagatcgggtctcag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 310 gctactctcttcccagtggactcttacagccttttcttatcgaggtagatcgggtctcag 251

                  
Query: 181 cccctga 187
           |||||||
Sbjct: 250 cccctga 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)