Query= MSMg01no496_a09.b1 MSMg01no496_a09.b1 CHROMAT_FILE:
MSMg01no496_a09.b1 PHD_FILE: MSMg01no496_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:13 2005
(394 letters)
>mm_chr6_139574107_139574900
Length = 794
Score = 571 bits (295), Expect = e-167
Identities = 322/331 (97%)
Strand = Plus / Minus
Query: 64 tctattgaaacaatgtttgcatatagaaaaatatgtagatcttaagtatatgattttagt 123
||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 794 tctattgaagcaatgtttgtatatagaaaaatatatagattttaagtatatgattttagt 735
Query: 124 cttcaggaatgtatgcatctgtcctgtcaacaaccaggggaaatattgaacagtgctgtc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cttcaggaatgtatgcatctgtcctgtcaacaaccaggggaaatattgaacagtgctgtt 675
Query: 184 cctttaaaagtttctccacgtctctgttaggttaagccaccaccctcttttgtactggtg 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctttaaaagtttctccacatctctgttaggttaagccaccaccctcttttgtactggtg 615
Query: 244 tctagatttctattatcatattttacttacgtatatgcttttgtttttggctcctgttac 303
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 614 tctagatttctattatcatattttacttacgtatatgctttcggttttggctcctgttac 555
Query: 304 taagtgatatttctttttaatatgtcttcatatcacagtccactgtataaaagcacagag 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 taagtgatatttctttttaatatatcttcatatcacagtccactgtataaaagcacagag 495
Query: 364 cattggcatttattgcacacctatcccatga 394
|||||||||||||||||||||||||||||||
Sbjct: 494 cattggcatttattgcacacctatcccatga 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a09.g1 MSMg01no496_a09.g1 CHROMAT_FILE:
MSMg01no496_a09.g1 PHD_FILE: MSMg01no496_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:13 2005
(413 letters)
>mm_chr6_139401968_139402779
Length = 812
Score = 692 bits (358), Expect = 0.0
Identities = 393/406 (96%), Gaps = 5/406 (1%)
Strand = Plus / Plus
Query: 1 ccaagactattgaaaggattctgttttccacattcttaaattcaacacccactgtttttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccaagactattgaaaggattctgttttccacattcttaaattcaacacccactg-tttta 259
Query: 61 acaaaaggttgactaatttttcacattttaatgtgatcagagaataagtagaattgcacc 120
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 acaaaagtttgactaatttttcacattttaatgtgatcagagaatgagtagaattgcacc 319
Query: 121 atatttattttttgggaaataacataaaatgtctttaataagatctgataagatttgaca 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atatttattttttaggaaataacataaaatgtctttaataagatctgataagatttgaca 379
Query: 181 ttgatttcaccctgagctctggtgctatggtagatccacaaggttcctg--ttgttttga 238
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 380 ttgatttcaccctgagctctggtgctatggtagatccacaaggttcctggttttttttga 439
Query: 239 caccatgattggagagttagctcttcatgagctacaccaagtttgactgcaaactcacaa 298
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 caccatgataggagagttagctcttcatgtgctacaccaagtttgactgcaaactcacaa 499
Query: 299 gtagtttaaaactaaaagttcctttttatttcttaagccacactctactgcaatgatata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtagtttaaaactaaaagttcctttttatttcttaagccacactctactgcaatgatata 559
Query: 359 tatatataatatggttctacacattgtttgcttttcatgttcaaga 404
|||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 560 tatata--atatggttctacacgttgtttgcttttcatgttcaaga 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space: 324412
Effective search space used: 324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
