BAC Information

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BAC

Clone NameMSMg01-496K23
Chromosome6 (Build37)
Map Location 50,127,525 - 50,174,716
singlet/doubletdoublet
Overlap geneMpp6, Dfna5h
Upstream geneIgf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524
Downstream geneLOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496K23.T7 (MSMg01no496_k23.b1)MSMg01-496K23.TJ (MSMg01no496_k23.g1)
ACCAG573432AG573433
length765777
length of high quality
(start - end)		636 (47 - 682)563 (76 - 638)
definitionCHROMAT_FILE: MSMg01no496_k23.b1 PHD_FILE: MSMg01no496_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:06 2005CHROMAT_FILE: MSMg01no496_k23.g1 PHD_FILE: MSMg01no496_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,127,525 - 50,128,156)(50,174,154 - 50,174,716)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAATTAAATTCAATAAGCAGTATGTTATAAGCACTGAAGATCTT
AAATAACAGTATAACTGGCATACCTTTATTAGGAAATCAAATTTAAGAGA
AACCTGTATGTTTGAATTTAAATTGGAAAATAGTTAGAACCTTTCTAGTG
TTTTGTCTCATTCGTAATTTAATCTTAATTTAAACTTAAACATATAAATC
ACAGTAAGGTGATCCAGAAAGTATTTTCCTTATTTGTTTTAGCCAGTGTA
ACTGTCTGATTAAAATGTCCTACAGAGGTTACGTTCTTGATGTTTTAAGG
TTGCCAGGTCTTACCTCAAGTTGACCGCTGTTTAATGTTGCTTTCAAGGT
GTCTGAACAATGTTGGTCCTGATCTACTGGAAGTACATGCCTCACACTGC
ATAAGTTATCTCAGGGTTATAACTGAAAATGACATTTATTTAAATTAAAA
ATGATGCAGTGTTTGTTGGGAAATCAAGTGAAAAGATTGAGAGGGGAGCC
GGGTAGAATGCAGTGATTATTGCACACTTCCTGCTTGAGGTTAGCTGTTG
AGGGGGTGGGTGATACAGCTCATGGGGGAGCACGCACCTACTGGCATGCA
AAGCCCTGGGGTTAAACCCCACACCGCGGAAGAAACAGGAGTTTTTAAAA
TGAACAAAATTTTAATGTAGCAAAATGTTGATTTTTCTGCTATACCAAAT
CATTATATTAATATN

NCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTATAGACCAGGCTGGCCTCGA
ACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCAGGATTAAAGGCGT
GTGCCACCAACGCCCGGCTTGCACAAGGTTTTATGAATATTCTGTAAGTG
GTGTATTTCTGAGGTCCCAAATCACAGTGGACCAGAGCTTCCTCTTGAGG
TATTTCTTCCCATAATTCCTACAGAAGGGGGGCAGGCTGTCAAAACCATA
ATGCTAGTGATGTTGTGACCTTGAGGAAGCTGATATAGATGAATGTCCTC
TTGCCTCCCTTCGGCTGACATAGGAAGGAAATACTGACCTACTTCAGCTT
CAAGGATGTTTATGAACAAAGGACCTTCCAGCTGTGAGGATGGGGTGGGA
GACATGGCTACTAAGATGTGGGCACATTCTCCTAGGTGACCTCACAGCTA
AGTCCTTCTCTGAGGTGGTCTGGGGTGGTCGCCATCCTGGACTAGATGAT
GGCTCTTTAGAAGCAGTCTTTTTCTCACTTTATTCTGTTGCAGTTAGACC
CAGGATATGCAAAAGGACCTCAGCACCTTGCATGCAGTCCAGGAGGGACA
GACAGGGTTGCTTGGTAGGATCCAGCCAGAGCCCGCTAAGACTTGCTCTG
TGGTTTCTCTCATAGCCCCCTCCTTTCTCTCCCTGGNCAGNTTGTATCTC
ATGCTCAGCTATGGGTCTTTTTCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_k23.b1 MSMg01no496_k23.b1 CHROMAT_FILE:
MSMg01no496_k23.b1 PHD_FILE: MSMg01no496_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:06 2005
         (636 letters)



>mm_chr6_50127321_50128356
          Length = 1036

 Score = 1176 bits (608), Expect = 0.0
 Identities = 626/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaattaaattcaataagcagtatgttataagcactgaagatcttaaataacagt 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaattaaagtaaataagcagtatgttataagcactgaagatcttaaataacagt 264

                                                                       
Query: 65  ataactggcatacctttattaggaaatcaaatttaagagaaacctgtatgtttgaattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataactggcatacctttattaggaaatcaaatttaagagaaacctgtatgtttgaattta 324

                                                                       
Query: 125 aattggaaaatagttagaacctttctagtgttttgtctcattcgtaatttaatcttaatt 184
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattggaaaatagttaggaccttcctagtgttttgtctcattcgtaatttaatcttaatt 384

                                                                       
Query: 185 taaacttaaacatataaatcacagtaaggtgatccagaaagtattttccttatttgtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacttaaacatataaatcacagtaaggtgatccagaaagtattttccttatttgtttt 444

                                                                       
Query: 245 agccagtgtaactgtctgattaaaatgtcctacagaggttacgttcttgatgttttaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccagtgtaactgtctgattaaaatgtcctacagaggttacgttcttgatgttttaagg 504

                                                                       
Query: 305 ttgccaggtcttacctcaagttgaccgctgtttaatgttgctttcaaggtgtctgaacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgccaggtcttacctcaagttgaccgctgtttaatgttgctttcaaggtgtctgaacaa 564

                                                                       
Query: 365 tgttggtcctgatctactggaagtacatgcctcacactgcataagttatctcagggttat 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcggtcctgatctactggaagtacatgcctcacactgcataagttatctcagggttat 624

                                                                       
Query: 425 aactgaaaatgacatttatttaaattaaaaatgatgcagtgtttgttgggaaatcaagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aactgaaaatgacatttatttaaattaaaaatgatgcagtgtttgttgggaaatcaagtg 684

                                                                       
Query: 485 aaaagattgagaggggagccgggtagaatgcagtgattattgcacacttcctgcttgagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaagattgagaggggagccgggtagaatgcagtgattattgcacacttcctgcttgagg 744

                                                                       
Query: 545 ttagctgttgagggggtgggtgatacagctcatgggggagcacgcacctactggcatgca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttagctgttgagggggtgggtgatacagctcatgggggagcacgcacctactggcatgca 804

                                           
Query: 605 aagccctggggttaaaccccacaccgcggaag 636
           ||||||||||||||||||||||||||| ||||
Sbjct: 805 aagccctggggttaaaccccacaccgcagaag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_k23.g1 MSMg01no496_k23.g1 CHROMAT_FILE:
MSMg01no496_k23.g1 PHD_FILE: MSMg01no496_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:06 2005
         (563 letters)



>mm_chr6_50173860_50174822
          Length = 963

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctatagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 actctatagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 798

                                                                       
Query: 61  caggattaaaggcgtgtgccaccaacgcccggcttgcacaaggttttatgaatattctgt 120
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 797 cgggattaaaggcgtgtgccaccaacgcgcggcttgcacaaggttttatgaatattctgt 738

                                                                       
Query: 121 aagtggtgtatttctgaggtcccaaatcacagtggaccagagcttcctcttgaggtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagtggtgtatttctgaggtcccaaatcacagtggaccagagcttcctcttgaggtattt 678

                                                                       
Query: 181 cttcccataattcctacagaaggggggcaggctgtcaaaaccataatgctagtgatgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttcccataattcctacagaaggggggcaggctgtcaaaaccataatgctagtgatgttg 618

                                                                       
Query: 241 tgaccttgaggaagctgatatagatgaatgtcctcttgcctcccttcggctgacatagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaccttgaggaagctgatatagatgaatgtcctcttgcctcccttcggctgacatagga 558

                                                                       
Query: 301 aggaaatactgacctacttcagcttcaaggatgtttatgaacaaaggaccttccagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggaaatactgacctacttcagcttcaaggatgtttatgaacaaaggaccttccagctgt 498

                                                                       
Query: 361 gaggatggggtgggagacatggctactaagatgtgggcacattctcctaggtgacctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaggatggggtgggagacatggctactaagatgtgggcacattctcctaggtgacctcac 438

                                                                       
Query: 421 agctaagtccttctctgaggtggtctggggtggtcgccatcctggactagatgatggctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agctaagtccttctctgaggtggtctggggtggtcgccatcctggactagatgatggctc 378

                                                                       
Query: 481 tttagaagcagtctttttctcactttattctgttgcagttagacccaggatatgcaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttagaagcagtctttttctcactttattctgttgcagttagacccaggatatgcaaaag 318

                                  
Query: 541 gacctcagcaccttgcatgcagt 563
           |||||||||||||||||||||||
Sbjct: 317 gacctcagcaccttgcatgcagt 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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