BAC Information

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BAC

Clone NameMSMg01-496N04
Chromosome6 (Build37)
Map Location 37,545,968 - 37,546,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496N04.T7 (MSMg01no496_n04.b1)MSMg01-496N04.TJ (MSMg01no496_n04.g1)
ACCAG573537AG573538
length746751
length of high quality
(start - end)
489 (81 - 569)671 (81 - 751)
definitionCHROMAT_FILE: MSMg01no496_n04.b1 PHD_FILE: MSMg01no496_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:17 2005CHROMAT_FILE: MSMg01no496_n04.g1 PHD_FILE: MSMg01no496_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTCTATAATTTGCGGTCGCTAAACGACTCACAATCGAAAGAGGA
GCCGCGGAATTCTCATTTCCTAAAACTCGAATGGCTGAGAAGCACCTAAA
GAAATGTTCAACATTCTTAGTCATCAGGGAAATGCAAATTAAAACAACCC
TGAGATTCCACCTCACAACAGTCAGAATGTCTAAGGTTGAAAACTCAGGG
ACAGCAGATGCTGGAGGAGGAGAAAGAGAAACATTCCCACACATTATTGG
TGGGATTGCAAGCTGGTACACCCACTCTGGAAATCAGTCTGGCAGTTCCT
CAGAAAACTGGACATACCTGATGATTTTGCTATACCACTCCTGGGCATAT
ACCCAGAAGATGCTCCAACATGTAATAAGGATATATGTTCTACTATGTTC
ACAGCAGCCATAGTTATAATACCCAGAAATGCCTTTCACCTCCCCTCTTT
CTCCATGCAGCCATGGCTGGCCTCTACTTCTCTACTCTCTCCTTCTCTCT
GCCTTTTTCTGCCTTTACTACTCTCTTAACTCCCCTTTCCATGCCCTAAA
TAAACTCTATTCTATACTANNNAAAANAAAAAAAAAAAAAAAAANAAGGA
AAAAAAAAAGCCAGAAGCTGGAAACAACCCAGATGTCCCTCAACAAAGGA
ATGGATTCAAAAAATGTACATTTATACAATGGAGTACTACTCAGCTATTA
GAAAATATCATCCTGAGTGAGGTAACTTAGTCACAAAAGAACACAT
AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGCTCCACGAGAATCATTGTCATGCAATAAATT
CTGACACCACTGGAAGAGCCAAATGTGTTCATCTGTGTTTCTGACACAGC
ACACACATGACAGGCAGAAAGATGTGATACCTTTTCCTGCCATCATAAGG
GCCACAGCAAACACTTATAAAAAAACAAAAAACAAAACAAAACAAAACAA
AAAGACAAATTAACAGGAGAAAAATATAATGGATTTATTTCATCAAAGTA
GCACATGAGATTTCAGAGACAAAGTGATTCATGGGGAAATGATCAGTGTA
TGCTTACATTTGATAAGGATGAATACATGAATAGAACTGGATTGGATGGA
GAAGATGCAACCTTGTGGTCCCAGACTAAGAACGTAAACAAAACAAGACC
TGTCTAAATTCTTCAGGCTTCTCTGTCCAGCTTTCCCTTCTCTGAGGTAC
AGGACAGAATCCTTCCTCGAGGCCTTTTGTCCTATGTCCTACAACATAAG
TCAGACAGTACTTTTTTATTTTTATTTTTTTAAATGGCTGTCTCTTATAC
AAGGAGGTGGGGAAGAATAGAGCAGTGGTCTTCACCCTGTGGGGTCACGA
CCTCTTTGAGGGTCACATATCAGATATCCTGCATATCAGATATGTACAGA
GCTAACATGAGGAACTGTATTAAAAGTCTGCAGTATTAGGAAAGTTGAGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_n04.g1 MSMg01no496_n04.g1 CHROMAT_FILE:
MSMg01no496_n04.g1 PHD_FILE: MSMg01no496_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:17 2005
         (671 letters)



>mm_chr6_37545768_37546838
          Length = 1071

 Score = 1274 bits (659), Expect = 0.0
 Identities = 668/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtcatgcaataaattctgacaccactggaagagccaaatgtgttcatctgtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgtcatgcaataaattctgacaccactggaagagccaaatgtgttcatctgtgttt 260

                                                                       
Query: 61  ctgacacagcacacacatgacaggcagaaagatgtgataccttttcctgccatcataagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacacagcacacacatgacaggcagaaagatgtgataccttttcctgccatcataagg 320

                                                                       
Query: 121 gccacagcaaacacttataaaaaaacaaaaaacaaaacaaaacaaaacaaaaagacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacagcaaacacttataaaaaaacaaaaaacaaaacaaaacaaaacaaaaagacaaat 380

                                                                       
Query: 181 taacaggagaaaaatataatggatttatttcatcaaagtagcacatgagatttcagagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaggagaaaaatataatggatttatttcatcaaagtagcacatgagatttcagagac 440

                                                                       
Query: 241 aaagtgattcatggggaaatgatcagtgtatgcttacatttgataaggatgaatacatga 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtgacccatggggaaatgatcagtgtatgcttacatttgataaggatgaatacatga 500

                                                                       
Query: 301 atagaactggattggatggagaagatgcaaccttgtggtcccagactaagaacgtaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagaactggattggatggagaagatgcaaccttgtggtcccagactaagaacgtaaaca 560

                                                                       
Query: 361 aaacaagacctgtctaaattcttcaggcttctctgtccagctttcccttctctgaggtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaagacctgtctaaattcttcaggcttctctgtccagctttcccttctctgaggtac 620

                                                                       
Query: 421 aggacagaatccttcctcgaggccttttgtcctatgtcctacaacataagtcagacagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggacagaatccttcctcgaggccttttgtcctatgtcctacaacataagtcagacagta 680

                                                                       
Query: 481 cttttttatttttatttttttaaatggctgtctcttatacaaggaggtggggaagaatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttttttatttttatttttttaaatggctgtctcttatacaaggaggtggggaagaatag 740

                                                                       
Query: 541 agcagtggtcttcaccctgtggggtcacgacctctttgagggtcacatatcagatatcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 agcagtggtcttcaccctgtggggtcacgacctctttgagggtcacatatcagatattct 800

                                                                       
Query: 601 gcatatcagatatgtacagagctaacatgaggaactgtattaaaagtctgcagtattagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatatcagatatgtacagagctaacatgaggaactgtattaaaagtctgcagtattagg 860

                      
Query: 661 aaagttgaggg 671
           |||||||||||
Sbjct: 861 aaagttgaggg 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)