Query= MSMg01no497_f04.b1 MSMg01no497_f04.b1 CHROMAT_FILE:
MSMg01no497_f04.b1 PHD_FILE: MSMg01no497_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
(690 letters)
>mm_chr6_52443945_52445038
Length = 1094
Score = 1193 bits (617), Expect = 0.0
Identities = 671/691 (97%), Gaps = 4/691 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgctgtgtctagagcagatgctatgtatggtagttaccctttttagttaggt 63
||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 204 ggaattcttgctgtgggtagagcagatgctatgtatagtagttaccttttttagttaggt 263
Query: 64 tttgctttctttagtaaattacaagtcacgtgctccaaagagcactgttcagggaagcca 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 tttgctttctttagtaaattacaagtcatgtgctccaaagagcactgttcagggaagcca 323
Query: 124 tcgaaaccatgaggggccacggtatcccagtattaataaccactgtggctaccaaaagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcgaaaccatgaggggccacggtatcccagtattaataaccactgtggctaccaaaagga 383
Query: 184 attgactgcgactcagtagtaagcttgcacgggaggctattttacagttgtaattacaaa 243
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 attgactgcggctcagtagtaagcttgcatgggaggctattttacagttgtaattacaaa 443
Query: 244 gggaaatgaagcctgcttctgcgatgccatgggctgctcttcctctgctataaccgtgag 303
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 gggaaatgaagtctgcttctgcgatgccaccggctgctcttcctctgctataaccgtgag 503
Query: 304 gactagccccccagggcaaacacactgcccgcctgctagctggctttatagcacaaacac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gactagccccccagggcaaacacactgcccgcctgctagctggctttatagcacaaacac 563
Query: 364 aggacggaaataaacacaatttaattgaggcagcatcttaagaactgggaaggtggct-- 421
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 aggacggaaataaacacaatttaattgaggcagcatcttaagaactggggaggtggctgg 623
Query: 422 --atctgttcccacagctccagataaaccttttagcaaatggtacaaactacttttatta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctatctgttcccacagctccagataaaccttttagcaaatggtacaaactacttttatta 683
Query: 480 agtcaacaaaatcctttgaagcaaagactcatatttctgatctagattttttttttattc 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 684 agtcaacaaaatcctttgaagcaaaggctcatatttctgatctagatttttttttaattc 743
Query: 540 taaaaatcagagttagtgtaataggataaacatgttaccatggacgaatctgttccactg 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaaaatcagagtcagtgtaataggataaacatgttaccatggacgaatctgttccactg 803
Query: 600 acaattatcttattcactgttacaggatgcaaagagacaccatgaccagggcaagtcttg 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acaattatcttagtcactgttacaggatgcaaagagacaccatgaccagggcaagtcttg 863
Query: 660 taaaagaaaacatgtcattgggggcttgctt 690
||||||||| |||||||||||||||||||||
Sbjct: 864 taaaagaaagcatgtcattgggggcttgctt 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1094
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1084
Effective search space: 737120
Effective search space used: 737120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_f04.g1 MSMg01no497_f04.g1 CHROMAT_FILE:
MSMg01no497_f04.g1 PHD_FILE: MSMg01no497_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
(167 letters)
>mm_chr6_52522618_52523184
Length = 567
Score = 319 bits (165), Expect = 5e-92
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 1 tcttttggcttcagaggaacctgtggatagagagtttatattaaatttatattgtgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcttttggcttcagaggaacctgtggatagagagtttatattaaatttatattgtgggtt 306
Query: 61 tttcctcctgttggatccagggccagccttagttaccaaagcacaagactttctagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttcctcctgttggatccagggccagccttagttaccaaagcacaagactttctagtcaa 246
Query: 121 agtttaggagggttggggtaggtattggagtattagggggtgtaa 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtttaggagggttggggtaggtattggagtattagggggtgtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space: 88881
Effective search space used: 88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
