BAC Information

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BAC

Clone NameMSMg01-498F04
Chromosome6 (Build37)
Map Location 43,338,661 - 43,470,613
singlet/doubletdoublet
Overlap geneTpk1
Upstream geneTas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498F04.T7 (MSMg01no498_f04.b1)MSMg01-498F04.TJ (MSMg01no498_f04.g1)
ACCAG574677AG574678
length738743
length of high quality
(start - end)		646 (55 - 700)630 (85 - 714)
definitionCHROMAT_FILE: MSMg01no498_f04.b1 PHD_FILE: MSMg01no498_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:18 2005CHROMAT_FILE: MSMg01no498_f04.g1 PHD_FILE: MSMg01no498_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,469,970 - 43,470,613)(43,338,661 - 43,339,291)
sequence
NNNNTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTTGTACCTCTGAGTGAACTGCCACTGTTTCTCAA
CAACACCTCCTTGACTGTTGCTTGCAAACACTACATAGAATCTCTGGGAA
TGGATTTCTCACAGCATCGACAGCAGTGTGATGAGTCTGGTGTGTGATTT
CACCTTCACAATTTCGTCATGTGCCCTTCCTCAGTGCCTCAGTTCAGGGA
CAGCAGGGGACAAGGTGCAAAGACTGGGCCAAGGTCAAGATGACTAACAC
CTAAGCATCTGATAAATTGCTCAGTTACCAAAATAGGATGGAGCTAGTGT
AAATCATTGAATTGGGGTAAATAGTAACAGAAAGATAGCAAGGACACTGG
TGACCAAATATTTGTACTTTTATGCTGTAAAGAGTAGACTTTGGAAAATT
CTGAACCACAAAGGCAATCCTCTAGATAGAAGAGCAGCAGCACTAGTTAC
TAGTCAGACATGGGACTCGAAATCTCCTCTCTAATTTTGTTTCGAAAAGA
ACATCCACAATTTTATCATGCTATCTAAGGACTGTGTAGTACTATAATTA
TAAAGGCAAAGATCTGACTGAGGAGCTGTTCCAACTGCAGTGTAAAGCTG
AATGAAGGCAGCAGAAAGGCTGTGCCATGGACCACCTGTTTTCTACTCTG
TGTCAAGGTTACAGGCCACCAGGCAGCTGCAGAAATAG

NNNNAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACAACTGTAGTAT
TCTAAAAAGAAAAGCAGCAAACTACATATATGTGGACTGTCCAGTCTTGT
TTAGAGTACCTTGCCTAGCTCTTAGCTAGACATTTGAAGATTGTCATTGA
CCTGTGGCTCCTACACAGAACACTGTGATGGAGTAAGGGAAGCTGGTGGA
AGGGGAAAACCCAGCAAAGCTCATTGTACAAATGTATGAAACGGTCAAAG
AATAAAAAAATGATGAAAATAAAAGGAATTCACAATAAAGCCATGATACT
GATCTCTAGCATGTAGCTTATGGTAGAAACATTAGACTCAGATCCAACCG
TTTCAGGAATACAATAAAATCAAATGTAGAAAAACATCCTGCAGAGTTCA
GGAGACAGGAAGGGTGGGTGTTTTGTCCTGCTGATACTGTCTTTTCCCAC
AATCTTTTTGGGCATGCAATCACTACTTACCTATTAAGGAATACTTGGAT
TTATTCTATAACACTAAATATTTTTAAATTGCTGTCTTACAACCAATACA
AATATAACAAAACTTTTGTAAATAGTACCTTATTCATCTCTACATTTTTG
CCATTTGATCTTTGACTATGTGCAATGCTGGCCACCACATAATAAAAGTA
CTATGAATATGTTATCTTTTATTTAATTTTATATTTCTGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_f04.b1 MSMg01no498_f04.b1 CHROMAT_FILE:
MSMg01no498_f04.b1 PHD_FILE: MSMg01no498_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:18 2005
         (646 letters)



>mm_chr6_43469766_43470813
          Length = 1048

 Score = 1154 bits (597), Expect = 0.0
 Identities = 632/645 (97%), Gaps = 4/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgtacctctgagtgaa---ctgccactgtttctcaacaacacctccttgac 61
           ||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 848 gaattcttttggacctctgagtgaactgctgccactgtttctcaacaacacctccttgac 789

                                                                       
Query: 62  tgttgcttgcaaacactacatagaatctctgggaatggatttctcacagcatcgacagca 121
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agttgcttgcaaacactacatagaatctctgggaatggatttctcacagcatcgacagca 729

                                                                       
Query: 122 gtgtgatgagtctggtgtgtgatttcaccttcacaatttcgtcatgtgcccttcctcagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgtgatgagtctggtgtgtgatttcaccttcacaatttcgtcatgtgcccttcctcagt 669

                                                                       
Query: 182 gcctcagttcagggacagcaggggacaaggtgcaaagactgggccaaggtcaagatgact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcctcagttcagggacagcaggggacaaggtgcaaagactgggccaaggtcaagatgact 609

                                                                       
Query: 242 aacacctaagcatctgataaattgctcagttaccaaaataggatggagctagtgtaaatc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aacacctaagcatctgataaattgctcagttaccaaaataggatggagctagtgtaaatc 549

                                                                       
Query: 302 attgaattggggtaaatagtaacagaaagatagcaaggacactggtgaccaaatatttgt 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 548 attgaattggggtaaatagtaagagaaagatagcaaggacactggtgaccaaatatttgt 489

                                                                       
Query: 362 acttttatgctgtaaagagtagactttggaaaattctgaaccacaaaggcaatcctctag 421
           |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 488 acttttatgctgtaaaaagtagactttggaaa-ttctgaaccacaaaggaaatcctctag 430

                                                                       
Query: 422 atagaagagcagcagcactagttactagtcagacatgggactcgaaatctcctctctaat 481
           |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 429 atagaagagcagcaccactagttattagtcagacacgggactcgaaatctcctctctaat 370

                                                                       
Query: 482 tttgtttcgaaaagaacatccacaattttatcatgctatctaaggactgtgtagtactat 541
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgttccgaaaagaacatccacaattttatcatgctatctaaggactgtgtagtactat 310

                                                                       
Query: 542 aattataaaggcaaagatctgactgaggagctgttccaactgcagtgtaaagctgaatga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aattataaaggcaaagatctgactgaggagctgttccaactgcagtgtaaagctgaatga 250

                                                        
Query: 602 aggcagcagaaaggctgtgccatggaccacctgttttctactctg 646
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aggcagcagaaaggctgtgccatggaccacctgttttctactctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space:   660168
Effective search space used:   660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_f04.g1 MSMg01no498_f04.g1 CHROMAT_FILE:
MSMg01no498_f04.g1 PHD_FILE: MSMg01no498_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:18 2005
         (630 letters)



>mm_chr6_43338461_43339491
          Length = 1031

 Score = 1205 bits (623), Expect = 0.0
 Identities = 629/631 (99%), Gaps = 1/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 260

                                                                       
Query: 61  tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 320

                                                                       
Query: 121 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 380

                                                                       
Query: 181 caaagctcattgtacaaatgtatgaaacggtcaaagaataaaaaaatgatgaaaataaaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 caaagctcattgtacaaatgtatgaaatggtcaaagaataaaaaaatgatgaaaataaaa 440

                                                                       
Query: 241 ggaattcacaataaagccatgatactgatctctagcatgtagcttatggtagaaacatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattcacaataaagccatgatactgatctctagcatgtagcttatggtagaaacatta 500

                                                                       
Query: 301 gactcagatccaaccgtttcaggaatacaataaaatcaaatgtagaaaaacatcctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcagatccaaccgtttcaggaatacaataaaatcaaatgtagaaaaacatcctgcag 560

                                                                       
Query: 361 agttcaggagacaggaagggtgggtgttttgtcctgctgatactgtcttttcccacaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttcaggagacaggaagggtgggtgttttgtcctgctgatactgtcttttcccacaatc 620

                                                                       
Query: 421 tttttgggcatgcaatcactacttacctattaaggaatacttggatttattctataacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgggcatgcaatcactacttacctattaaggaatacttggatttattctataacac 680

                                                                       
Query: 481 taaatatttttaaattgctgtcttacaaccaatacaaatataacaaaacttttgtaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatatttttaaattgctgtcttacaaccaatacaaatataacaaaacttttgtaaata 740

                                                                       
Query: 541 gtaccttattcatctctacatttttgccatttgatctttgactatgtgcaatgctggcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaccttattcatctctacatttttgccatttgatctttgactatgtgcaatgctggcca 800

                                          
Query: 601 c-cacataataaaagtactatgaatatgtta 630
           | |||||||||||||||||||||||||||||
Sbjct: 801 cacacataataaaagtactatgaatatgtta 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space:   633020
Effective search space used:   633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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