Query= MSMg01no498_h04.b1 MSMg01no498_h04.b1 CHROMAT_FILE:
MSMg01no498_h04.b1 PHD_FILE: MSMg01no498_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:29 2005
(549 letters)
>mm_chr6_65982686_65983635
Length = 950
Score = 986 bits (510), Expect = 0.0
Identities = 537/546 (98%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 5 gaattcctccattatctgtgctttagttcatcctccagattctgccttgacttccctcag 64
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcctccaagatctgtgctttagttcatcctctagattctgccttgacttccctcag 264
Query: 65 tgctggactatgacatgagagttgtaaaatagaataagccctgtatcgctcagttgtgtt 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctggactatgacgtgagagttgtaaaatagaataagccctgtatcgctcagttgtgtg 324
Query: 125 tagtcatggtgtttatcatagcaacacaaatcaaagtatgacaatcgggattactaatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtcatggtgtttatcatagcaacacaaatcaaagtatgacaatcgggattactaatca 384
Query: 185 tatatcaatattgtttactcttgaggaatctctctgtcatttcccctcacagctttacta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatatcaatattgtttactcttgaggaatctctctgtcatttcccctcacagctttacta 444
Query: 245 atttgcattgccaccaagagtgttcaatgattccttctctctatagtctcctgactttga 304
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 atttccattgccaccaagagtgttcaatggttccttctctctatagtctcctgactttga 504
Query: 305 ttgccattaatctttttgttaacaactctcttactaggctgaatgacatggcctaggtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgccattaatctttttgttaacaactctcttactaggctgaatgacatggcctaggtta 564
Query: 365 gaggcagcctggtctccttgctgatagatatgctgttcccatggtcttcccttcttcata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggcagcctggtctccttgctgatagatatgctgttcccatggtcttcccttcttcata 624
Query: 425 ttcacagacaaaacaatgggaattctttttgtctttctgtttc-tttggccatttctaac 483
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 625 ttcacagacaaaacaatgggaatcctttttgtctttctgtttcctttggccatttctaac 684
Query: 484 atgtgaggaaagtttgaagactccagttgtaaacttatagtgcatgccttcccatccact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtgaggaaagtttgaagactccagttgtaaacttatagtgcatgccttcccatccact 744
Query: 544 ctgcca 549
||||||
Sbjct: 745 ctgcca 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_h04.g1 MSMg01no498_h04.g1 CHROMAT_FILE:
MSMg01no498_h04.g1 PHD_FILE: MSMg01no498_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:29 2005
(573 letters)
>mm_chr6_66150049_66151017
Length = 969
Score = 1073 bits (555), Expect = 0.0
Identities = 567/573 (98%), Gaps = 4/573 (0%)
Strand = Plus / Minus
Query: 1 agatcacacgattgctgtgatgttaagtggaatagtttactcacagcatgtcttgtagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agatcacacgattgctgtgatgttaagtggaatagtttactcacagcatgtcttgtagca 710
Query: 61 tggaacatattctagaatatcatcatcattattctttggacttggttctcaggacagttg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tggaacatactctagaatatcatcatcattattctttggacttggttctcaggacagttg 650
Query: 121 cctccctcctagccttcagactctcctgaggcaggcagcactctgttcgtctattcacac 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 649 cctccctcctagccttcagactctcctgaggcaggcagcactct----gtctattcacac 594
Query: 181 agagtgagttaaacaaggtctggcacacatcaggggtccattcatctttatcagtgagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agagtgagttaaacaaggtctggcacacatcaggggtccattcatctttatcagtgagta 534
Query: 241 gatagctgtggagtgatgcattctgtgggaataccctatttatggccttggctctcatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gatagctgtggagtgatgcattctgtgggaataccctatttatggccttggctctcatgc 474
Query: 301 agactggggatataggtgacagtgggcattatctggatttctgccttaaactttggtgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agactggggatataggtgacagtgggcattatctggatttctgccttaaactttggtgtt 414
Query: 361 tagaatcgcagagggaattgcgaggatttttttctgtgacgtcctttgcctgccgacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tagaatcgcagagggaattgcgaggatttttttctgtgacgtcctttgcctgccgacaga 354
Query: 421 tgttaccagagcagtcagtgctgaaaacacgcctctagtgtggctggaaaccatcagtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgttaccagagcagtcagtgctgaaaacacgcctctagtgtggctggaaaccatcagtgg 294
Query: 481 aaaacagtctttaaataaatctacacagtctgtgtaaagacataaattttcgcttggagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaaacagtctttaaataaatctacacagtctgtgtaaagacataaattttcgcttggagg 234
Query: 541 aaaggacaggaagtgaagtgtacagtgctgcag 573
|||||||||||||||||||||| ||||||||||
Sbjct: 233 aaaggacaggaagtgaagtgtaaagtgctgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 969
Length adjustment: 10
Effective length of query: 563
Effective length of database: 959
Effective search space: 539917
Effective search space used: 539917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
